Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | ACFDHR_RS10065 | Genome accession | NZ_CP170238 |
| Coordinates | 2043960..2044934 (-) | Length | 324 a.a. |
| NCBI ID | WP_257070565.1 | Uniprot ID | - |
| Organism | Staphylococcus hyicus strain SC360 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2038960..2049934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDHR_RS10030 (ACFDHR_10030) | gcvT | 2039561..2040652 (-) | 1092 | WP_107632992.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACFDHR_RS10035 (ACFDHR_10035) | - | 2040807..2041337 (-) | 531 | WP_107632993.1 | shikimate kinase | - |
| ACFDHR_RS10040 (ACFDHR_10040) | - | 2041315..2041512 (-) | 198 | WP_039645590.1 | hypothetical protein | - |
| ACFDHR_RS10045 (ACFDHR_10045) | - | 2041496..2041978 (-) | 483 | WP_039645587.1 | competence type IV pilus minor pilin ComGF | - |
| ACFDHR_RS10050 (ACFDHR_10050) | comGD | 2042171..2042602 (-) | 432 | WP_209260663.1 | competence type IV pilus minor pilin ComGD | - |
| ACFDHR_RS10055 (ACFDHR_10055) | comGC | 2042592..2042912 (-) | 321 | WP_107632995.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFDHR_RS10060 (ACFDHR_10060) | comGB | 2042924..2043991 (-) | 1068 | WP_119635812.1 | competence type IV pilus assembly protein ComGB | - |
| ACFDHR_RS10065 (ACFDHR_10065) | comGA | 2043960..2044934 (-) | 975 | WP_257070565.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFDHR_RS10070 (ACFDHR_10070) | - | 2044990..2045613 (-) | 624 | WP_107632997.1 | MBL fold metallo-hydrolase | - |
| ACFDHR_RS10075 (ACFDHR_10075) | - | 2045628..2045939 (-) | 312 | WP_039645576.1 | MTH1187 family thiamine-binding protein | - |
| ACFDHR_RS10080 (ACFDHR_10080) | - | 2045941..2046927 (-) | 987 | WP_039645573.1 | ROK family glucokinase | - |
| ACFDHR_RS10085 (ACFDHR_10085) | - | 2046924..2047127 (-) | 204 | WP_039645571.1 | YqgQ family protein | - |
| ACFDHR_RS10090 (ACFDHR_10090) | - | 2047129..2048568 (-) | 1440 | WP_305849953.1 | rhomboid family intramembrane serine protease | - |
| ACFDHR_RS10095 (ACFDHR_10095) | - | 2048586..2049125 (-) | 540 | WP_119635809.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| ACFDHR_RS10100 (ACFDHR_10100) | rpmG | 2049238..2049402 (-) | 165 | WP_257053265.1 | 50S ribosomal protein L33 | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37003.84 Da Isoelectric Point: 7.2046
>NTDB_id=1055782 ACFDHR_RS10065 WP_257070565.1 2043960..2044934(-) (comGA) [Staphylococcus hyicus strain SC360]
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPYDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
MQLLIDHVVQYAITHEASDIHFIPNSSQVDVKLRIKDYLKPYDTLNLETYQKMLTLLKFKAGLDVSSRHKAQSGRYIYEY
ETLYYLRVSTLPLNLGNESCVIRITPQLFHTDINQTAYDIQKTMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKDVIQASLSGHLVLSTIHANDCKGVLL
RLIEMGITKQDLLQALNLIVNQRLITTNDNSRKLVYELMSQDDIRYFLDHNFVLPKHFESLNDKLTELKKKGEIDDVTLR
KYQK
Nucleotide
Download Length: 975 bp
>NTDB_id=1055782 ACFDHR_RS10065 WP_257070565.1 2043960..2044934(-) (comGA) [Staphylococcus hyicus strain SC360]
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTATGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAATTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
ATGCAATTATTAATTGACCATGTCGTACAATATGCCATAACACATGAAGCGTCGGACATTCATTTTATTCCGAATTCATC
ACAAGTCGATGTAAAGCTAAGAATTAAAGATTATTTAAAACCTTATGACACATTAAATTTAGAGACGTATCAAAAAATGT
TAACATTATTAAAATTCAAAGCTGGACTTGATGTATCTTCTAGACATAAAGCACAAAGTGGGCGTTATATCTACGAATAT
GAGACATTATATTATTTACGTGTTTCAACACTACCATTAAATTTAGGCAATGAAAGCTGTGTCATTCGCATTACCCCGCA
ATTGTTTCACACTGATATTAATCAAACCGCTTATGACATACAAAAAACCATGGAAAAGAAACAAGGATTAATATTATTTA
GTGGTCCAACAGGTGCAGGCAAAAGTACATTAATGTATCAAATGGTGGTATACGCTAAAGAAAAACTCAACTTAAATATC
ATTACAATAGAAGATCCAGTCGAACAATTGCTAAATGGAGTAACACAAATATCTGTAAATGAAAAAGCTGATATTACTTA
TGGAAATTCATTAAAAGCAATATTACGGTGTGATCCAGATGTAATTTTAATTGGTGAAATAAGAGATGGTTTAATTGCAA
AAGATGTCATTCAAGCAAGTTTGAGTGGCCATTTAGTTTTATCGACTATACACGCAAATGATTGCAAAGGCGTATTATTA
CGCCTTATTGAAATGGGAATTACGAAACAAGATTTATTACAAGCACTTAATCTTATAGTAAATCAGCGTTTAATTACGAC
AAATGACAATTCAAGGAAACTCGTTTATGAACTAATGTCTCAAGATGATATACGGTACTTTTTGGACCATAATTTTGTAC
TACCTAAACACTTTGAAAGTCTTAATGACAAACTGACTGAGCTAAAAAAGAAAGGAGAGATAGATGACGTCACATTACGA
AAATATCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.204 |
99.691 |
0.58 |
| comGA | Staphylococcus aureus N315 |
58.204 |
99.691 |
0.58 |