Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DI45_RS09595 Genome accession   NZ_CP007560
Coordinates   1899846..1900952 (+) Length   368 a.a.
NCBI ID   WP_047235569.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS743     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894846..1905952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI45_RS09575 (DI45_09910) hasA 1895596..1896783 (+) 1188 WP_181876679.1 hyaluronan synthase HasA -
  DI45_RS09580 (DI45_09915) hasB 1896819..1898027 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  DI45_RS09585 (DI45_09920) hasC 1898209..1899123 (+) 915 WP_002991444.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  DI45_RS09590 (DI45_09925) yaaA 1899431..1899844 (+) 414 WP_010922800.1 S4 domain-containing protein YaaA -
  DI45_RS09595 (DI45_09930) recF 1899846..1900952 (+) 1107 WP_047235569.1 DNA replication/repair protein RecF Machinery gene
  DI45_RS09600 (DI45_09935) - 1901008..1901871 (-) 864 WP_047235570.1 GRP family sugar transporter -
  DI45_RS09605 (DI45_09940) guaB 1902073..1903554 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  DI45_RS09610 (DI45_09945) trpS 1903862..1904884 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41837.74 Da        Isoelectric Point: 7.8079

>NTDB_id=105576 DI45_RS09595 WP_047235569.1 1899846..1900952(+) (recF) [Streptococcus pyogenes strain NGAS743]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNYVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQVDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=105576 DI45_RS09595 WP_047235569.1 1899846..1900952(+) (recF) [Streptococcus pyogenes strain NGAS743]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACTACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAGTTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465

Multiple sequence alignment