Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ACLV7Q_RS02840 Genome accession   NZ_OZ217341
Coordinates   545077..545673 (+) Length   198 a.a.
NCBI ID   WP_000966739.1    Uniprot ID   E8KDK4
Organism   Streptococcus mitis isolate S. mitis C22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540077..550673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS02820 (SMIC22_05460) - 540130..541047 (+) 918 WP_001281495.1 dihydrodipicolinate synthase family protein -
  ACLV7Q_RS02825 (SMIC22_05470) - 541065..541949 (+) 885 WP_218756965.1 ROK family protein -
  ACLV7Q_RS02830 (SMIC22_05480) - 541965..542816 (-) 852 WP_049531834.1 MurR/RpiR family transcriptional regulator -
  ACLV7Q_RS02835 (SMIC22_05490) pbp2b 543009..545066 (+) 2058 WP_218756964.1 penicillin-binding protein PBP2B -
  ACLV7Q_RS02840 (SMIC22_05500) recR 545077..545673 (+) 597 WP_000966739.1 recombination mediator RecR Machinery gene
  ACLV7Q_RS02845 (SMIC22_05510) - 545849..546892 (+) 1044 WP_218756963.1 D-alanine--D-alanine ligase -
  ACLV7Q_RS02850 (SMIC22_05520) - 546977..548350 (+) 1374 WP_218756962.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  ACLV7Q_RS02855 (SMIC22_05530) - 548445..549149 (+) 705 WP_218756961.1 TIGR02206 family membrane protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21712.88 Da        Isoelectric Point: 4.4995

>NTDB_id=1055729 ACLV7Q_RS02840 WP_000966739.1 545077..545673(+) (recR) [Streptococcus mitis isolate S. mitis C22]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMPDDDVNEFAKNLLAAKRELTYCSICGRLTDEDPCSICTDPSRDQS
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1055729 ACLV7Q_RS02840 WP_000966739.1 545077..545673(+) (recR) [Streptococcus mitis isolate S. mitis C22]
ATGCTTTATCCAACACCTATTGCTAAGTTGATTGACAGTTATTCCAAACTTCCTGGTATTGGGATTAAGACAGCAACTCG
ACTGGCCTTTTATACTATTGGAATGCCGGATGACGACGTCAATGAATTTGCAAAAAATCTTCTTGCAGCCAAGCGAGAAT
TGACCTATTGCTCTATTTGTGGACGATTAACAGATGAAGACCCGTGCTCTATCTGTACCGATCCTAGCCGTGATCAGTCT
ACGATTCTGGTCCTGGAGGATAGCCGCGATGTCGCTGCCATGGAAAATATTCAGGAATACCACGGACTTTACCATGTCCT
GCATGGTCTCATTTCTCCCATGAATGGCATTAGTCCAGATGATATCAATCTCAAGAGCCTCATGACCCGTCTTATGGATA
GTGAGGTTTCAGAAGTAATTGTAGCAACCAATGCCACAGCAGATGGGGAAGCGACTTCCATGTATCTTTCCCGCTTACTC
AAGCCAGCTGGGATCAAGGTTACGCGCCTGGCACGAGGTCTTGCTGTGGGAGCAGATATCGAGTATGCGGACGAAGTGAC
CCTCTTACGAGCCATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E8KDK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

96.97

100

0.97
  recR Bacillus subtilis subsp. subtilis str. 168

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495