Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDHT_RS08990 Genome accession   NZ_CP170227
Coordinates   1852653..1853534 (-) Length   293 a.a.
NCBI ID   WP_305850067.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC368     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1847653..1858534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHT_RS08975 (ACFDHT_08970) xerC 1848160..1849050 (-) 891 WP_039646062.1 tyrosine recombinase XerC -
  ACFDHT_RS08980 (ACFDHT_08975) trmFO 1849172..1850476 (-) 1305 WP_305850066.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDHT_RS08985 (ACFDHT_08980) topA 1850489..1852558 (-) 2070 WP_039646065.1 type I DNA topoisomerase -
  ACFDHT_RS08990 (ACFDHT_08985) dprA 1852653..1853534 (-) 882 WP_305850067.1 DNA-processing protein DprA Machinery gene
  ACFDHT_RS08995 (ACFDHT_08990) sucD 1854076..1854984 (-) 909 WP_039646070.1 succinate--CoA ligase subunit alpha -
  ACFDHT_RS09000 (ACFDHT_08995) sucC 1855006..1856172 (-) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDHT_RS09005 (ACFDHT_09000) - 1856385..1856654 (-) 270 WP_039646074.1 hypothetical protein -
  ACFDHT_RS09010 (ACFDHT_09005) - 1856741..1857517 (-) 777 WP_371129295.1 ribonuclease HII -
  ACFDHT_RS09015 (ACFDHT_09010) ylqF 1857507..1858388 (-) 882 WP_039647653.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33291.72 Da        Isoelectric Point: 9.8622

>NTDB_id=1055724 ACFDHT_RS08990 WP_305850067.1 1852653..1853534(-) (dprA) [Staphylococcus hyicus strain SC368]
MLLKNLIRLCYAGFTTQQLYRLFKKPLDVLTNDITQTLHQRITYENHPLFHTKLQKFNALNASQILYQLRQAHITPITIL
NDQYPRLLKEIYQPPLILFCKGNLSLLNAASYKLAIVGARDCTQYGDEAVRYLLQKMKRASIIVVSGLAKGTDALAHYNA
LKNEMPTIGVLGFGHQYHYPSETKPLRHTLETNQLGLTISEYPPMTPPAKFRFPERNRIISGISHGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDMFNKHTKGNMMRVKEGAEIVLSAEDILKDMNTSIR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=1055724 ACFDHT_RS08990 WP_305850067.1 1852653..1853534(-) (dprA) [Staphylococcus hyicus strain SC368]
GTGCTACTAAAAAATTTAATAAGATTATGTTACGCAGGATTTACGACACAACAACTTTATCGTCTTTTCAAAAAACCATT
GGACGTGTTAACCAATGACATCACACAGACATTGCACCAGCGTATTACTTATGAAAATCATCCTTTGTTTCATACCAAAC
TCCAAAAATTCAACGCGCTAAATGCCTCTCAAATTCTATATCAGCTACGGCAGGCTCACATTACGCCAATTACAATTTTA
AATGATCAATATCCACGTCTCTTAAAAGAAATCTACCAGCCACCCTTAATATTATTTTGCAAAGGTAACCTTTCGCTATT
AAACGCAGCTTCATATAAATTAGCGATAGTAGGTGCACGCGATTGTACGCAATATGGAGATGAAGCTGTACGTTATTTGC
TTCAAAAGATGAAGCGTGCTTCCATTATTGTTGTATCAGGACTTGCTAAAGGTACGGATGCACTTGCACATTACAATGCA
TTGAAAAATGAGATGCCTACTATAGGTGTGTTAGGTTTTGGGCATCAATATCATTATCCTTCTGAAACAAAACCATTACG
CCATACATTAGAAACGAACCAACTTGGTTTAACTATTAGTGAATATCCTCCTATGACCCCACCGGCTAAGTTTCGTTTTC
CTGAGCGCAATCGTATAATTAGTGGGATAAGCCATGGGGTTTTAGTGACAGAAGCGAAAGAGCGAAGCGGTGCACTTATT
ACACTAGATCAAGCACTAGAACAAAATAGGAATGTATATGTATTACCTGGAGATATGTTTAATAAGCATACAAAAGGTAA
TATGATGCGTGTTAAAGAAGGGGCTGAAATCGTACTCTCGGCTGAAGATATTTTAAAAGATATGAATACGTCAATTCGGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

50.175

97.27

0.488
  dprA Staphylococcus aureus MW2

49.825

97.27

0.485

Multiple sequence alignment