Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8622_RS03135 Genome accession   NZ_AP028408
Coordinates   603850..604623 (+) Length   257 a.a.
NCBI ID   WP_002858613.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-11860     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 598850..609623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8622_RS03120 (I11860_06190) - 599699..601633 (-) 1935 WP_002895855.1 RNB domain-containing ribonuclease -
  R8622_RS03125 (I11860_06200) ilvC 601752..602774 (+) 1023 WP_317648550.1 ketol-acid reductoisomerase -
  R8622_RS03130 (I11860_06210) - 602778..603860 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  R8622_RS03135 (I11860_06220) dprA 603850..604623 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  R8622_RS03140 (I11860_06230) ruvX 604620..605003 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX -
  R8622_RS03145 (I11860_06240) - 605032..605871 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8622_RS03150 (I11860_06250) msrA 606047..606544 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8622_RS03155 (I11860_06260) ppa 606586..607104 (-) 519 WP_002895852.1 inorganic diphosphatase -
  R8622_RS03160 (I11860_06270) adk 607114..607692 (-) 579 WP_002859580.1 adenylate kinase -
  R8622_RS03165 (I11860_06280) aspS 607689..609440 (-) 1752 WP_002895850.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28864.66 Da        Isoelectric Point: 7.0853

>NTDB_id=105567 R8622_RS03135 WP_002858613.1 603850..604623(+) (dprA) [Campylobacter jejuni strain IDH-11860]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105567 R8622_RS03135 WP_002858613.1 603850..604623(+) (dprA) [Campylobacter jejuni strain IDH-11860]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAATCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment