Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8622_RS02945 Genome accession   NZ_AP028408
Coordinates   559085..559735 (-) Length   216 a.a.
NCBI ID   WP_002874218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-11860     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 554085..564735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8622_RS02910 (I11860_05740) - 554463..555467 (+) 1005 WP_002852264.1 membrane protein -
  R8622_RS02915 (I11860_05750) tlyA 555464..556225 (+) 762 WP_002852328.1 TlyA family RNA methyltransferase -
  R8622_RS02920 (I11860_05760) ribF 556191..557045 (+) 855 WP_317648535.1 bifunctional riboflavin kinase/FAD synthetase -
  R8622_RS02925 (I11860_05770) cmoA 557032..557742 (+) 711 WP_079254426.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8622_RS02930 (I11860_05780) - 557732..557953 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8622_RS02935 (I11860_05790) - 557950..558384 (-) 435 WP_215484782.1 EexN family lipoprotein -
  R8622_RS02940 (I11860_05800) - 558442..559074 (-) 633 WP_002874216.1 trimeric intracellular cation channel family protein -
  R8622_RS02945 (I11860_05810) CJE0566 559085..559735 (-) 651 WP_002874218.1 DNA/RNA non-specific endonuclease Regulator
  R8622_RS02950 (I11860_05820) nth 559732..560358 (-) 627 WP_002852225.1 endonuclease III -
  R8622_RS02955 (I11860_05830) peb4 560439..561260 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  R8622_RS02960 (I11860_05840) fbaA 561260..562324 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  R8622_RS02965 (I11860_05850) - 562419..563861 (+) 1443 WP_052790153.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25473.09 Da        Isoelectric Point: 9.5529

>NTDB_id=105566 R8622_RS02945 WP_002874218.1 559085..559735(-) (CJE0566) [Campylobacter jejuni strain IDH-11860]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105566 R8622_RS02945 WP_002874218.1 559085..559735(-) (CJE0566) [Campylobacter jejuni strain IDH-11860]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment