Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDHW_RS08890 Genome accession   NZ_CP170222
Coordinates   1769491..1770372 (+) Length   293 a.a.
NCBI ID   WP_305850067.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC382     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1764491..1775372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHW_RS08865 (ACFDHW_08870) ylqF 1764637..1765518 (+) 882 WP_039647653.1 ribosome biogenesis GTPase YlqF -
  ACFDHW_RS08870 (ACFDHW_08875) - 1765508..1766284 (+) 777 WP_371129295.1 ribonuclease HII -
  ACFDHW_RS08875 (ACFDHW_08880) - 1766371..1766640 (+) 270 WP_039646074.1 hypothetical protein -
  ACFDHW_RS08880 (ACFDHW_08885) sucC 1766853..1768019 (+) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDHW_RS08885 (ACFDHW_08890) sucD 1768041..1768949 (+) 909 WP_039646070.1 succinate--CoA ligase subunit alpha -
  ACFDHW_RS08890 (ACFDHW_08895) dprA 1769491..1770372 (+) 882 WP_305850067.1 DNA-processing protein DprA Machinery gene
  ACFDHW_RS08895 (ACFDHW_08900) topA 1770467..1772536 (+) 2070 WP_039646065.1 type I DNA topoisomerase -
  ACFDHW_RS08900 (ACFDHW_08905) trmFO 1772549..1773853 (+) 1305 WP_305850066.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDHW_RS08905 (ACFDHW_08910) xerC 1773975..1774865 (+) 891 WP_039646062.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33291.72 Da        Isoelectric Point: 9.8622

>NTDB_id=1055620 ACFDHW_RS08890 WP_305850067.1 1769491..1770372(+) (dprA) [Staphylococcus hyicus strain SC382]
MLLKNLIRLCYAGFTTQQLYRLFKKPLDVLTNDITQTLHQRITYENHPLFHTKLQKFNALNASQILYQLRQAHITPITIL
NDQYPRLLKEIYQPPLILFCKGNLSLLNAASYKLAIVGARDCTQYGDEAVRYLLQKMKRASIIVVSGLAKGTDALAHYNA
LKNEMPTIGVLGFGHQYHYPSETKPLRHTLETNQLGLTISEYPPMTPPAKFRFPERNRIISGISHGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDMFNKHTKGNMMRVKEGAEIVLSAEDILKDMNTSIR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=1055620 ACFDHW_RS08890 WP_305850067.1 1769491..1770372(+) (dprA) [Staphylococcus hyicus strain SC382]
GTGCTACTAAAAAATTTAATAAGATTATGTTACGCAGGATTTACGACACAACAACTTTATCGTCTTTTCAAAAAACCATT
GGACGTGTTAACCAATGACATCACACAGACATTGCACCAGCGTATTACTTATGAAAATCATCCTTTGTTTCATACCAAAC
TCCAAAAATTCAACGCGCTAAATGCCTCTCAAATTCTATATCAGCTACGGCAGGCTCACATTACGCCAATTACAATTTTA
AATGATCAATATCCACGTCTCTTAAAAGAAATCTACCAGCCACCCTTAATATTATTTTGCAAAGGTAACCTTTCGCTATT
AAACGCAGCTTCATATAAATTAGCGATAGTAGGTGCACGCGATTGTACGCAATATGGAGATGAAGCTGTACGTTATTTGC
TTCAAAAGATGAAGCGTGCTTCCATTATTGTTGTATCAGGACTTGCTAAAGGTACGGATGCACTTGCACATTACAATGCA
TTGAAAAATGAGATGCCTACTATAGGTGTGTTAGGTTTTGGGCATCAATATCATTATCCTTCTGAAACAAAACCATTACG
CCATACATTAGAAACGAACCAACTTGGTTTAACTATTAGTGAATATCCTCCTATGACCCCACCGGCTAAGTTTCGTTTTC
CTGAGCGCAATCGTATAATTAGTGGGATAAGCCATGGGGTTTTAGTGACAGAAGCGAAAGAGCGAAGCGGTGCACTTATT
ACACTAGATCAAGCACTAGAACAAAATAGGAATGTATATGTATTACCTGGAGATATGTTTAATAAGCATACAAAAGGTAA
TATGATGCGTGTTAAAGAAGGGGCTGAAATCGTACTCTCGGCTGAAGATATTTTAAAAGATATGAATACGTCAATTCGGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

50.175

97.27

0.488
  dprA Staphylococcus aureus MW2

49.825

97.27

0.485

Multiple sequence alignment