Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDHX_RS03735 Genome accession   NZ_CP170218
Coordinates   707263..708144 (+) Length   293 a.a.
NCBI ID   WP_305850067.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC392     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 702263..713144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHX_RS03710 (ACFDHX_03715) ylqF 702409..703290 (+) 882 WP_039647653.1 ribosome biogenesis GTPase YlqF -
  ACFDHX_RS03715 (ACFDHX_03720) - 703280..704056 (+) 777 WP_381418759.1 ribonuclease HII -
  ACFDHX_RS03720 (ACFDHX_03725) - 704143..704412 (+) 270 WP_039646074.1 hypothetical protein -
  ACFDHX_RS03725 (ACFDHX_03730) sucC 704625..705791 (+) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDHX_RS03730 (ACFDHX_03735) sucD 705813..706721 (+) 909 WP_039646070.1 succinate--CoA ligase subunit alpha -
  ACFDHX_RS03735 (ACFDHX_03740) dprA 707263..708144 (+) 882 WP_305850067.1 DNA-processing protein DprA Machinery gene
  ACFDHX_RS03740 (ACFDHX_03745) topA 708239..710308 (+) 2070 WP_039646065.1 type I DNA topoisomerase -
  ACFDHX_RS03745 (ACFDHX_03750) trmFO 710321..711625 (+) 1305 WP_305850066.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDHX_RS03750 (ACFDHX_03755) xerC 711747..712637 (+) 891 WP_039646062.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33291.72 Da        Isoelectric Point: 9.8622

>NTDB_id=1055579 ACFDHX_RS03735 WP_305850067.1 707263..708144(+) (dprA) [Staphylococcus hyicus strain SC392]
MLLKNLIRLCYAGFTTQQLYRLFKKPLDVLTNDITQTLHQRITYENHPLFHTKLQKFNALNASQILYQLRQAHITPITIL
NDQYPRLLKEIYQPPLILFCKGNLSLLNAASYKLAIVGARDCTQYGDEAVRYLLQKMKRASIIVVSGLAKGTDALAHYNA
LKNEMPTIGVLGFGHQYHYPSETKPLRHTLETNQLGLTISEYPPMTPPAKFRFPERNRIISGISHGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDMFNKHTKGNMMRVKEGAEIVLSAEDILKDMNTSIR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=1055579 ACFDHX_RS03735 WP_305850067.1 707263..708144(+) (dprA) [Staphylococcus hyicus strain SC392]
GTGCTACTAAAAAATTTAATAAGATTATGTTACGCAGGATTTACGACACAACAACTTTATCGTCTTTTCAAAAAACCATT
GGACGTGTTAACCAATGACATCACACAGACATTGCACCAGCGTATTACTTATGAAAATCATCCTTTGTTTCATACCAAAC
TCCAAAAATTCAACGCGCTAAATGCCTCTCAAATTCTATATCAGCTACGGCAGGCTCACATTACGCCAATTACAATTTTA
AATGATCAATATCCACGTCTCTTAAAAGAAATCTACCAGCCACCCTTAATATTATTTTGCAAAGGTAACCTTTCGCTATT
AAACGCAGCTTCATATAAATTAGCGATAGTAGGTGCACGCGATTGTACGCAATATGGAGATGAAGCTGTACGTTATTTGC
TTCAAAAGATGAAGCGTGCTTCCATTATTGTTGTATCAGGACTTGCTAAAGGTACGGATGCACTTGCACATTACAATGCA
TTGAAAAATGAGATGCCTACTATAGGTGTGTTAGGTTTTGGGCATCAATATCATTATCCTTCTGAAACAAAACCATTACG
CCATACATTAGAAACGAACCAACTTGGTTTAACTATTAGTGAATATCCTCCTATGACCCCACCGGCTAAGTTTCGTTTTC
CTGAGCGCAATCGTATAATTAGTGGGATAAGCCATGGGGTTTTAGTGACAGAAGCGAAAGAGCGAAGCGGTGCACTTATT
ACACTAGATCAAGCACTAGAACAAAATAGGAATGTATATGTATTACCTGGAGATATGTTTAATAAGCATACAAAAGGTAA
TATGATGCGTGTTAAAGAAGGGGCTGAAATCGTACTCTCGGCTGAAGATATTTTAAAAGATATGAATACGTCAATTCGGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

50.175

97.27

0.488
  dprA Staphylococcus aureus MW2

49.825

97.27

0.485

Multiple sequence alignment