Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFDHY_RS03495 Genome accession   NZ_CP170216
Coordinates   666906..667787 (+) Length   293 a.a.
NCBI ID   WP_381420121.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC393     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 661906..672787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHY_RS03470 (ACFDHY_03470) ylqF 662052..662933 (+) 882 WP_039647653.1 ribosome biogenesis GTPase YlqF -
  ACFDHY_RS03475 (ACFDHY_03475) - 662923..663699 (+) 777 WP_371129295.1 ribonuclease HII -
  ACFDHY_RS03480 (ACFDHY_03480) - 663786..664055 (+) 270 WP_039646074.1 hypothetical protein -
  ACFDHY_RS03485 (ACFDHY_03485) sucC 664268..665434 (+) 1167 WP_381420119.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFDHY_RS03490 (ACFDHY_03490) sucD 665456..666364 (+) 909 WP_039646070.1 succinate--CoA ligase subunit alpha -
  ACFDHY_RS03495 (ACFDHY_03495) dprA 666906..667787 (+) 882 WP_381420121.1 DNA-processing protein DprA Machinery gene
  ACFDHY_RS03500 (ACFDHY_03500) topA 667882..669951 (+) 2070 WP_039646065.1 type I DNA topoisomerase -
  ACFDHY_RS03505 (ACFDHY_03505) trmFO 669964..671268 (+) 1305 WP_039646064.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACFDHY_RS03510 (ACFDHY_03510) xerC 671390..672280 (+) 891 WP_381420124.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33280.76 Da        Isoelectric Point: 9.7792

>NTDB_id=1055547 ACFDHY_RS03495 WP_381420121.1 666906..667787(+) (dprA) [Staphylococcus hyicus strain SC393]
MLLKNLIRLCYAGFTTQQLYRLFKKPLDVLTNDITQTLHQRITYENHPLFHTKLQKFYALNASQILCQLRQAHITPITIL
NDQYPRLLKEIYQPPLILFCKGNLSLLNAASYKLAIVGARDCTQYGDEAVRYLLQKMKRASIIVVSGLAKGTDALAHYNA
LKNEMPTIGVLGFGHQYHYPSETKPLRHTLETNQLGLTISEYPPMTPPAKFRFPERNRIISGISHGVLVTEAKERSGALI
TLDQALEQNRNVYVLPGDMFNKHTKGNMMRVKEGAEIVLSAEDILKDMNTSIR

Nucleotide


Download         Length: 882 bp        

>NTDB_id=1055547 ACFDHY_RS03495 WP_381420121.1 666906..667787(+) (dprA) [Staphylococcus hyicus strain SC393]
GTGCTACTAAAAAATTTAATAAGATTATGTTACGCAGGATTTACGACACAACAACTTTATCGTCTTTTCAAAAAACCATT
GGACGTGTTAACCAATGACATCACACAGACATTGCACCAGCGTATTACTTATGAAAATCATCCTTTGTTTCATACCAAAC
TCCAAAAATTCTACGCGCTAAATGCCTCTCAAATTCTATGTCAGCTACGGCAGGCTCACATTACGCCAATTACAATTTTA
AATGATCAATATCCACGTCTCTTAAAAGAAATCTACCAGCCACCCTTAATATTATTTTGCAAAGGTAACCTTTCGCTATT
AAACGCAGCTTCATATAAATTAGCGATAGTAGGTGCACGCGATTGTACGCAATATGGAGATGAAGCTGTACGTTATTTGC
TTCAAAAGATGAAGCGTGCTTCCATTATTGTTGTATCAGGACTTGCTAAAGGTACGGATGCACTTGCACATTACAATGCA
TTGAAAAATGAGATGCCTACTATAGGTGTGTTAGGTTTTGGGCATCAATATCATTATCCTTCTGAAACAAAACCATTACG
CCATACATTAGAAACGAACCAACTTGGTTTAACTATTAGTGAATATCCTCCTATGACCCCACCGGCTAAGTTTCGTTTTC
CTGAGCGCAATCGTATAATTAGTGGGATAAGCCATGGGGTTTTAGTGACAGAAGCGAAAGAGCGAAGCGGTGCACTTATT
ACACTAGATCAAGCACTAGAACAAAATAGGAATGTATATGTATTACCTGGAGATATGTTTAATAAGCATACAAAAGGTAA
TATGATGCGTGTTAAAGAAGGGGCTGAAATCGTACTCTCGGCTGAAGATATTTTAAAAGATATGAATACGTCAATTCGGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

50.175

97.27

0.488
  dprA Staphylococcus aureus MW2

50.175

97.27

0.488

Multiple sequence alignment