Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACFDAU_RS09530 Genome accession   NZ_CP170197
Coordinates   1943510..1944301 (+) Length   263 a.a.
NCBI ID   WP_413436697.1    Uniprot ID   -
Organism   Sulfuriferula sp. GW1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938510..1949301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDAU_RS09515 (ACFDAU_09515) - 1940020..1941747 (-) 1728 WP_413439531.1 autotransporter assembly complex protein TamA -
  ACFDAU_RS09520 (ACFDAU_09520) pgeF 1941794..1942546 (-) 753 WP_413436695.1 peptidoglycan editing factor PgeF -
  ACFDAU_RS09525 (ACFDAU_09525) rluD 1942543..1943448 (-) 906 WP_413436696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACFDAU_RS09530 (ACFDAU_09530) comL 1943510..1944301 (+) 792 WP_413436697.1 outer membrane protein assembly factor BamD Machinery gene
  ACFDAU_RS09535 (ACFDAU_09535) - 1944360..1944698 (-) 339 WP_413436698.1 P-II family nitrogen regulator -
  ACFDAU_RS09540 (ACFDAU_09540) - 1944721..1946322 (-) 1602 WP_413436699.1 NAD+ synthase -
  ACFDAU_RS09545 (ACFDAU_09545) sucD 1946319..1947191 (-) 873 WP_413436700.1 succinate--CoA ligase subunit alpha -
  ACFDAU_RS09550 (ACFDAU_09550) sucC 1947283..1948455 (-) 1173 WP_413436701.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30128.17 Da        Isoelectric Point: 8.3169

>NTDB_id=1055506 ACFDAU_RS09530 WP_413436697.1 1943510..1944301(+) (comL) [Sulfuriferula sp. GW1]
MKRSLLVLLVVLLAGCGLLPKTVDETQGWSAQRLYAEAKDQLNSGGYEKAIKYFETLEARYPYGRYAQQAQLEVAYAYYK
DNEPVSAIAACDRFIKLHPEHPNVDYAYYLRGLANFTEDQGLLGRIGDQDMTERDPKAASESFDSFQQLVTRFPNSKYTP
DALARMKYLVDSLASHEVHVALYYYKRGAYVAASKRAQYAIEHYPNAPAIEQALAILVKSYDKMGINDLRDDALRVLQKN
FPNSKYVSGNFDKSKPWWRFWQL

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1055506 ACFDAU_RS09530 WP_413436697.1 1943510..1944301(+) (comL) [Sulfuriferula sp. GW1]
ATGAAACGAAGTTTACTTGTTTTGTTGGTGGTACTGCTGGCTGGATGTGGTTTGTTACCGAAGACGGTTGATGAAACCCA
GGGTTGGTCGGCACAAAGACTCTACGCAGAAGCCAAGGATCAGCTCAATTCGGGTGGCTATGAAAAAGCCATCAAATACT
TCGAGACGCTGGAAGCGCGCTACCCCTACGGACGCTATGCCCAGCAAGCCCAACTGGAAGTTGCCTACGCCTATTACAAA
GACAATGAGCCGGTTTCCGCCATTGCCGCCTGCGACCGCTTTATCAAGCTGCATCCCGAGCACCCCAATGTGGATTATGC
CTACTACCTGAGGGGGCTGGCCAACTTTACCGAAGACCAGGGGCTGTTGGGGAGGATTGGCGATCAGGATATGACCGAAC
GCGATCCAAAGGCTGCAAGCGAGTCATTTGATTCGTTTCAGCAACTCGTCACACGTTTTCCAAACAGCAAATATACCCCG
GATGCGCTGGCGCGCATGAAATACCTGGTGGATTCGCTGGCCTCGCACGAAGTGCACGTCGCCCTGTATTACTATAAGCG
CGGCGCCTATGTGGCTGCCAGCAAGCGCGCCCAGTATGCCATCGAGCATTATCCGAATGCGCCCGCTATCGAACAGGCGC
TGGCGATCCTTGTTAAATCCTACGATAAAATGGGTATCAATGACTTGCGCGATGATGCCTTGCGGGTGTTACAGAAAAAC
TTCCCGAACAGTAAATATGTGTCGGGAAATTTTGACAAGAGCAAACCCTGGTGGCGTTTCTGGCAACTCTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

50.936

100

0.517
  comL Neisseria gonorrhoeae MS11

49.813

100

0.506

Multiple sequence alignment