Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACH8EH_RS10715 Genome accession   NZ_OZ197914
Coordinates   2031014..2031442 (-) Length   142 a.a.
NCBI ID   WP_017147177.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-24-002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2026014..2036442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH8EH_RS10680 - 2026558..2026908 (-) 351 Protein_2067 pilin -
  ACH8EH_RS10685 - 2027290..2027688 (-) 399 Protein_2068 pilin -
  ACH8EH_RS10690 - 2027850..2028182 (-) 333 Protein_2069 pilin -
  ACH8EH_RS10695 - 2028201..2028578 (-) 378 Protein_2070 pilin -
  ACH8EH_RS10700 - 2028709..2029155 (-) 447 Protein_2071 pilin -
  ACH8EH_RS10705 - 2029681..2030070 (-) 390 Protein_2072 pilin -
  ACH8EH_RS10710 - 2030608..2030961 (-) 354 Protein_2073 pilin -
  ACH8EH_RS10715 pilE 2031014..2031442 (-) 429 WP_017147177.1 pilin Machinery gene
  ACH8EH_RS10720 - 2031488..2031802 (+) 315 Protein_2075 NAD(P)-dependent oxidoreductase -
  ACH8EH_RS10725 metG 2031877..2033931 (-) 2055 WP_047919415.1 methionine--tRNA ligase -
  ACH8EH_RS10730 glmS 2034047..2035885 (-) 1839 WP_047922618.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15391.38 Da        Isoelectric Point: 8.9654

>NTDB_id=1055477 ACH8EH_RS10715 WP_017147177.1 2031014..2031442(-) (pilE) [Neisseria gonorrhoeae isolate SGC-24-002]
MASPASDIKGKYVQSVTVANGVVTAQMKSDGVNKEIKNKKLSLWARREAGSVKWFCGQPVTRDKAVTDDAVKDVTGNDKI
ETKHLPSTCRCFQIGSVKWFCGQPVTRDNAGTDAVTADTTGKDKEIDTKHLPSTCRDKSSAE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1055477 ACH8EH_RS10715 WP_017147177.1 2031014..2031442(-) (pilE) [Neisseria gonorrhoeae isolate SGC-24-002]
GTGGCATCCCCCGCCTCCGACATCAAAGGCAAATATGTTCAAAGCGTTACGGTCGCAAACGGCGTCGTTACCGCCCAAAT
GAAATCAGACGGCGTAAACAAAGAAATCAAAAACAAAAAACTCTCCCTGTGGGCCAGGCGTGAAGCCGGTTCGGTAAAAT
GGTTCTGCGGACAGCCGGTTACGCGCGACAAAGCCGTCACCGACGACGCCGTCAAAGACGTCACCGGCAACGACAAAATC
GAAACCAAGCACCTGCCGTCAACCTGCCGTTGCTTTCAAATCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCG
CGACAACGCCGGCACCGACGCCGTCACCGCCGACACCACCGGCAAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAA
CCTGCCGCGATAAATCATCTGCCGAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(5-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.455

61.972

0.437
  pilE Neisseria gonorrhoeae MS11

68.889

63.38

0.437