Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LMH68_RS12820 Genome accession   NZ_CP170175
Coordinates   2760863..2762251 (+) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2755863..2767251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS12800 (LMH68_012805) rsxB 2756283..2756876 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  LMH68_RS12805 (LMH68_012810) rsxA 2756879..2757457 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  LMH68_RS12815 (LMH68_012820) uvrB 2758530..2760560 (+) 2031 WP_017062180.1 excinuclease ABC subunit UvrB -
  LMH68_RS12820 (LMH68_012825) luxO 2760863..2762251 (+) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LMH68_RS12825 (LMH68_012830) luxU 2762276..2762620 (+) 345 WP_017062179.1 quorum-sensing phosphorelay protein LuxU -
  LMH68_RS12830 (LMH68_012835) - 2762695..2763582 (-) 888 WP_017062178.1 YvcK family protein -
  LMH68_RS12835 (LMH68_012840) moaA 2763918..2764907 (+) 990 WP_009848642.1 GTP 3',8-cyclase MoaA -
  LMH68_RS12840 (LMH68_012845) moaB 2764994..2765506 (+) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  LMH68_RS12845 (LMH68_012850) moaC 2765519..2765998 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  LMH68_RS12850 (LMH68_012855) moaD 2765995..2766240 (+) 246 WP_004737346.1 molybdopterin synthase sulfur carrier subunit -
  LMH68_RS12855 (LMH68_012860) moaE 2766243..2766698 (+) 456 WP_210445839.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=1055458 LMH68_RS12820 WP_004734031.1 2760863..2762251(+) (luxO) [Vibrio sp. F13 strain 10N.222.55.B3]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1055458 LMH68_RS12820 WP_004734031.1 2760863..2762251(+) (luxO) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGCAATCAAAAACGCTAGATAATAAATCGAAGTATTTGTTGATGGTCGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGACATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCGGTTATCTTCATGACGGCTCACGGTTCTATCGATACCGCCGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAGCCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAACTTAAAA
ACAGCTCGGAACACCCGGGAAACCAAAATTACCAAGGTTTTATTGGTAGCAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGACTCTGCAGCATCGAGTAAGGCCAGTATTTTCATTACAGGTGAAAGTGGTACCGGTAAAGAGGTGTGTGCAGAAGC
TATTCATGCGGCGAGTAAGCGTGGTGACAAGCCTTTCATCGCGATTAACTGTGCGGCTATCCCTAAAGATCTGATTGAAA
GTGAGCTATTTGGCCACGTTAAAGGCGCCTTTACCGGTGCTGCAACCGATCGCCAAGGTGCCGCTGAACTCGCTGATGGC
GGTACACTATTCCTTGATGAATTGTGCGAAATGGACTTAGAGCTACAAACTAAGCTGCTGCGCTTTATCCAAACCGGTAC
TTTCCAAAAAGTCGGCTCTTCGAAGATGAAGAGTGTCGACGTTCGTTTTGTGTGTGCGACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCATTGCACTTGCCGCCATTGCGTGAG
CGTGGTGAAGATGTCATCGAGATCGCGTATTCTCTGCTAGGCTATATGTCGGTCGAGGAGGGGAAGGCGTTTGTACGTTT
TGCTCAGGAAGTACTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTGTTGCGGAACG
TGGTGGTTTTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCACCACCGTTGAACCAACCGATTGAAAACAGTCTG
CGATTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
GCAGGCCATTAAAGCGTGTGATGGCAACATCCCTCGTGCGGCAGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment