Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   LMH68_RS10750 Genome accession   NZ_CP170175
Coordinates   2297970..2298575 (-) Length   201 a.a.
NCBI ID   WP_102428504.1    Uniprot ID   -
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2292970..2303575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS10740 (LMH68_010740) aceF 2294185..2296104 (+) 1920 WP_229647632.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  LMH68_RS10745 (LMH68_010745) lpdA 2296347..2297777 (+) 1431 WP_017059440.1 dihydrolipoyl dehydrogenase -
  LMH68_RS10750 (LMH68_010750) opaR 2297970..2298575 (-) 606 WP_102428504.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  LMH68_RS10755 (LMH68_010755) hpt 2298913..2299443 (+) 531 WP_017059438.1 hypoxanthine phosphoribosyltransferase -
  LMH68_RS10760 (LMH68_010760) can 2299518..2300186 (-) 669 WP_017063246.1 carbonate dehydratase -
  LMH68_RS10765 (LMH68_010765) - 2300473..2302104 (+) 1632 WP_017063247.1 SulP family inorganic anion transporter -
  LMH68_RS10770 (LMH68_010770) - 2302441..2303358 (+) 918 WP_017059435.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23247.49 Da        Isoelectric Point: 6.4040

>NTDB_id=1055456 LMH68_RS10750 WP_102428504.1 2297970..2298575(-) (opaR) [Vibrio sp. F13 strain 10N.222.55.B3]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERSEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1055456 LMH68_RS10750 WP_102428504.1 2297970..2298575(-) (opaR) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTCGCAACAGTAT
TTAATTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCTCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGTAAAGCGATCGAACGCAGCGAAGTTTGCGACGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCACTGTTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGTTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.5

99.502

0.811
  hapR Vibrio cholerae C6706

72.864

99.005

0.721
  hapR Vibrio cholerae strain A1552

72.864

99.005

0.721

Multiple sequence alignment