Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LMH68_RS10645 Genome accession   NZ_CP170175
Coordinates   2275428..2275946 (+) Length   172 a.a.
NCBI ID   WP_017056597.1    Uniprot ID   A0A2N7J9T1
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2270428..2280946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS10635 (LMH68_010635) gshA 2273174..2274742 (+) 1569 WP_017063229.1 glutamate--cysteine ligase -
  LMH68_RS10640 (LMH68_010640) - 2274753..2275403 (+) 651 WP_017629422.1 hypothetical protein -
  LMH68_RS10645 (LMH68_010645) luxS 2275428..2275946 (+) 519 WP_017056597.1 S-ribosylhomocysteine lyase Regulator
  LMH68_RS10650 (LMH68_010650) - 2276044..2277315 (-) 1272 WP_017063233.1 HlyC/CorC family transporter -
  LMH68_RS10655 (LMH68_010655) - 2277443..2278237 (-) 795 WP_019825854.1 inner membrane protein YpjD -
  LMH68_RS10660 (LMH68_010660) ffh 2278438..2279832 (+) 1395 WP_010435884.1 signal recognition particle protein -
  LMH68_RS10665 (LMH68_010665) rpsP 2280045..2280293 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  LMH68_RS10670 (LMH68_010670) rimM 2280318..2280872 (+) 555 WP_017063236.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.67 Da        Isoelectric Point: 4.4901

>NTDB_id=1055452 LMH68_RS10645 WP_017056597.1 2275428..2275946(+) (luxS) [Vibrio sp. F13 strain 10N.222.55.B3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1055452 LMH68_RS10645 WP_017056597.1 2275428..2275946(+) (luxS) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAACGCACCTGCCGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCACCTATATGCTGGTTTCATGCGTAATCAATTGAACGGTTCAGATGTAGAGATCATCGATATCTCACCG
ATGGGCTGTCGCACTGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAACAACAAGTGGCTGACGGTTGGTTGGCAGC
GATGCAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGCTGAACGAATACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCGAATGCGATCATCGCTGCAGGCATCTCTGTAAACAAGAATGATGAACTGGCA
CTGCCAGAGTCTATGCTGCAAGAGCTTAAGATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7J9T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment