Detailed information NTG1055286

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LW586_RS21580
• Genome accession: NZ_CP170137
• Coordinates: 4377274..4378074 (+)
• Length: 266 a.a.
• NCBI ID: WP_232689511.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain AF004KP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4372274..4383074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LW586_RS21545 (LW586_21550)	gspH	4372427..4372942 (+)	516	WP_104467234.1	type II secretion system minor pseudopilin GspH	-
LW586_RS21550 (LW586_21555)	gspI	4372939..4373304 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
LW586_RS21555 (LW586_21560)	gspJ	4373301..4373897 (+)	597	WP_064155385.1	type II secretion system minor pseudopilin GspJ	-
LW586_RS21560 (LW586_21565)	gspK	4373894..4374874 (+)	981	WP_080820705.1	type II secretion system minor pseudopilin GspK	-
LW586_RS21565 (LW586_21570)	gspL	4374867..4376063 (+)	1197	WP_232689512.1	type II secretion system protein GspL	-
LW586_RS21570 (LW586_21575)	-	4376056..4376541 (+)	486	WP_004204409.1	type II secretion system protein M	-
LW586_RS21575 (LW586_21580)	-	4376531..4377259 (+)	729	WP_087825048.1	type II secretion system protein N	-
LW586_RS21580 (LW586_21585)	pilD	4377274..4378074 (+)	801	WP_232689511.1	prepilin peptidase	Machinery gene
LW586_RS21585 (LW586_21590)	hrpB	4378122..4380551 (-)	2430	WP_048296711.1	ATP-dependent helicase HrpB	-
LW586_RS21590 (LW586_21595)	thpR	4380624..4381160 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
LW586_RS21595 (LW586_21600)	sfsA	4381160..4381876 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
LW586_RS21600 (LW586_21605)	dksA	4382039..4382494 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29225.75 Da
• Isoelectric Point: 8.9065

>NTDB_id=1055286 LW586_RS21580 WP_232689511.1 4377274..4378074(+) (pilD) [Klebsiella quasipneumoniae strain AF004KP1]
MTTLAALSLHFPLVWNGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1055286 LW586_RS21580 WP_232689511.1 4377274..4378074(+) (pilD) [Klebsiella quasipneumoniae strain AF004KP1]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGAATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATCCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421