Detailed information NTG1055204

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACE3NH_RS21550
• Genome accession: NZ_CP170118
• Coordinates: 4454767..4455567 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain G5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4449767..4460567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE3NH_RS21515 (ACE3NH_21515)	gspH	4449923..4450438 (+)	516	WP_117078463.1	type II secretion system minor pseudopilin GspH	-
ACE3NH_RS21520 (ACE3NH_21520)	gspI	4450435..4450800 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACE3NH_RS21525 (ACE3NH_21525)	gspJ	4450797..4451393 (+)	597	WP_117078464.1	type II secretion system minor pseudopilin GspJ	-
ACE3NH_RS21530 (ACE3NH_21530)	gspK	4451390..4452376 (+)	987	WP_117078465.1	type II secretion system minor pseudopilin GspK	-
ACE3NH_RS21535 (ACE3NH_21535)	gspL	4452363..4453556 (+)	1194	WP_117078466.1	type II secretion system protein GspL	-
ACE3NH_RS21540 (ACE3NH_21540)	-	4453549..4454034 (+)	486	WP_004145896.1	type II secretion system protein M	-
ACE3NH_RS21545 (ACE3NH_21545)	-	4454024..4454770 (+)	747	WP_004145897.1	type II secretion system protein N	-
ACE3NH_RS21550 (ACE3NH_21550)	pilD	4454767..4455567 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
ACE3NH_RS21555 (ACE3NH_21555)	hrpB	4455615..4458044 (-)	2430	WP_032422018.1	ATP-dependent helicase HrpB	-
ACE3NH_RS21560 (ACE3NH_21560)	thpR	4458117..4458653 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACE3NH_RS21565 (ACE3NH_21565)	sfsA	4458653..4459369 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACE3NH_RS21570 (ACE3NH_21570)	dksA	4459532..4459987 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1055204 ACE3NH_RS21550 WP_002888947.1 4454767..4455567(+) (pilD) [Klebsiella pneumoniae strain G5]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1055204 ACE3NH_RS21550 WP_002888947.1 4454767..4455567(+) (pilD) [Klebsiella pneumoniae strain G5]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425