Detailed information
Bioinformatically predicted
Overview
| Name | ctsF | Type | Machinery gene |
| Locus tag | R8920_RS01555 | Genome accession | NZ_AP028404 |
| Coordinates | 313244..314419 (+) | Length | 391 a.a. |
| NCBI ID | WP_025399236.1 | Uniprot ID | A0A5T1TX26 |
| Organism | Campylobacter coli strain BCH-11568 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 308244..319419
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8920_RS01530 (B11568_02990) | ctsR | 308813..309124 (+) | 312 | WP_002779316.1 | hypothetical protein | Machinery gene |
| R8920_RS01535 (B11568_03000) | ctsD | 309102..310520 (+) | 1419 | WP_002779315.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| R8920_RS01540 (B11568_03010) | ctsP | 310513..311109 (+) | 597 | WP_052780105.1 | ATP-binding protein | Machinery gene |
| R8920_RS01545 (B11568_03020) | - | 311106..311702 (+) | 597 | WP_002779313.1 | CDC27 family protein | - |
| R8920_RS01550 (B11568_03030) | ctsE | 311695..313257 (+) | 1563 | WP_052782729.1 | GspE/PulE family protein | Machinery gene |
| R8920_RS01555 (B11568_03040) | ctsF | 313244..314419 (+) | 1176 | WP_025399236.1 | type II secretion system F family protein | Machinery gene |
| R8920_RS01560 (B11568_03050) | - | 314416..315180 (-) | 765 | WP_002781157.1 | TSUP family transporter | - |
| R8920_RS01565 (B11568_03060) | - | 315183..315947 (-) | 765 | WP_002781156.1 | TIGR02757 family protein | - |
| R8920_RS01570 (B11568_03070) | flgK | 315964..317790 (-) | 1827 | WP_002784059.1 | flagellar hook-associated protein FlgK | - |
| R8920_RS01575 (B11568_03080) | - | 317800..318234 (-) | 435 | WP_002779263.1 | flagellar protein FlgN | - |
| R8920_RS01580 (B11568_03090) | flgM | 318276..318473 (-) | 198 | WP_002779262.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| R8920_RS01585 (B11568_03100) | - | 318536..318877 (-) | 342 | WP_038847454.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 45545.42 Da Isoelectric Point: 9.5342
>NTDB_id=105516 R8920_RS01555 WP_025399236.1 313244..314419(+) (ctsF) [Campylobacter coli strain BCH-11568]
MKLYELEIKGKTKQKKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF
MKLYELEIKGKTKQKKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF
Nucleotide
Download Length: 1176 bp
>NTDB_id=105516 R8920_RS01555 WP_025399236.1 313244..314419(+) (ctsF) [Campylobacter coli strain BCH-11568]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGAAAAAGCATTTAAGAGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATCTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGAAAAAGCATTTAAGAGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATCTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsF | Campylobacter jejuni subsp. jejuni 81-176 |
60.406 |
100 |
0.609 |