Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8920_RS01530 Genome accession   NZ_AP028404
Coordinates   308813..309124 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain BCH-11568     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303813..314124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8920_RS01520 (B11568_02970) - 304487..305125 (+) 639 WP_002784063.1 HAD family hydrolase -
  R8920_RS01525 (B11568_02980) nifJ 305229..308789 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8920_RS01530 (B11568_02990) ctsR 308813..309124 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8920_RS01535 (B11568_03000) ctsD 309102..310520 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8920_RS01540 (B11568_03010) ctsP 310513..311109 (+) 597 WP_052780105.1 ATP-binding protein Machinery gene
  R8920_RS01545 (B11568_03020) - 311106..311702 (+) 597 WP_002779313.1 CDC27 family protein -
  R8920_RS01550 (B11568_03030) ctsE 311695..313257 (+) 1563 WP_052782729.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=105512 R8920_RS01530 WP_002779316.1 308813..309124(+) (ctsR) [Campylobacter coli strain BCH-11568]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105512 R8920_RS01530 WP_002779316.1 308813..309124(+) (ctsR) [Campylobacter coli strain BCH-11568]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment