Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACNUDU_RS13360 Genome accession   NZ_OZ197099
Coordinates   2635146..2636228 (-) Length   360 a.a.
NCBI ID   WP_014532468.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2630146..2641228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS13340 - 2630761..2630859 (-) 99 WP_374731584.1 hypothetical protein -
  ACNUDU_RS13345 secA 2630901..2633432 (-) 2532 WP_031775871.1 preprotein translocase subunit SecA -
  ACNUDU_RS13350 hpf 2633846..2634418 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACNUDU_RS13355 - 2634479..2635153 (-) 675 WP_001057961.1 ComF family protein -
  ACNUDU_RS13360 comFA 2635146..2636228 (-) 1083 WP_014532468.1 DEAD/DEAH box helicase Machinery gene
  ACNUDU_RS13365 fakB1 2636592..2637458 (-) 867 WP_000686345.1 fatty acid kinase binding subunit FakB1 -
  ACNUDU_RS13370 - 2637602..2638243 (+) 642 WP_416763815.1 YigZ family protein -
  ACNUDU_RS13375 - 2638409..2639464 (-) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  ACNUDU_RS13380 gdpS 2639782..2640852 (+) 1071 WP_000460986.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42024.50 Da        Isoelectric Point: 9.6802

>NTDB_id=1055093 ACNUDU_RS13360 WP_014532468.1 2635146..2636228(-) (comFA) [Staphylococcus aureus isolate 23S00079-1]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
IEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=1055093 ACNUDU_RS13360 WP_014532468.1 2635146..2636228(-) (comFA) [Staphylococcus aureus isolate 23S00079-1]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGAGCAGGTAAGACAGAAATGATGTTCCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
ATTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGTGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369

Multiple sequence alignment