Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACNUDU_RS10630 Genome accession   NZ_OZ197099
Coordinates   2105489..2106640 (-) Length   383 a.a.
NCBI ID   WP_000020355.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 2100489..2111640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS10610 - 2100885..2101682 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  ACNUDU_RS10615 - 2101856..2102071 (+) 216 WP_000026308.1 hypothetical protein -
  ACNUDU_RS10620 rny 2102368..2103927 (-) 1560 WP_001050913.1 ribonuclease Y -
  ACNUDU_RS10625 recA 2104281..2105324 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  ACNUDU_RS10630 cinA 2105489..2106640 (-) 1152 WP_000020355.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACNUDU_RS10635 pgsA 2106865..2107443 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACNUDU_RS10640 - 2107477..2107869 (-) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  ACNUDU_RS10645 - 2107888..2108715 (-) 828 WP_000214890.1 YmfK family protein -
  ACNUDU_RS10650 ymfI 2108820..2109524 (-) 705 WP_000646222.1 elongation factor P 5-aminopentanone reductase -
  ACNUDU_RS10655 yfmH 2109524..2110810 (-) 1287 WP_000664762.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43166.44 Da        Isoelectric Point: 6.0928

>NTDB_id=1055070 ACNUDU_RS10630 WP_000020355.1 2105489..2106640(-) (cinA) [Staphylococcus aureus isolate 23S00079-1]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKINEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1055070 ACNUDU_RS10630 WP_000020355.1 2105489..2106640(-) (cinA) [Staphylococcus aureus isolate 23S00079-1]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTAATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GGTTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment