Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R9A04_RS07765 Genome accession   NZ_AP028402
Coordinates   1507974..1509155 (-) Length   393 a.a.
NCBI ID   WP_317729754.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11531     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502974..1514155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A04_RS07735 (B11531_15320) - 1503518..1503859 (+) 342 WP_002784057.1 hypothetical protein -
  R9A04_RS07740 (B11531_15330) flgM 1503922..1504119 (+) 198 WP_317729753.1 flagellar biosynthesis anti-sigma factor FlgM -
  R9A04_RS07745 (B11531_15340) - 1504162..1504596 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R9A04_RS07750 (B11531_15350) flgK 1504606..1506432 (+) 1827 WP_002918630.1 flagellar hook-associated protein FlgK -
  R9A04_RS07755 (B11531_15360) - 1506449..1507213 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R9A04_RS07760 (B11531_15370) - 1507217..1507981 (+) 765 WP_002855301.1 TSUP family transporter -
  R9A04_RS07765 (B11531_15380) ctsF 1507974..1509155 (-) 1182 WP_317729754.1 type II secretion system F family protein Machinery gene
  R9A04_RS07770 (B11531_15390) ctsE 1509152..1510711 (-) 1560 WP_317729755.1 GspE/PulE family protein Machinery gene
  R9A04_RS07775 (B11531_15400) ctsX 1510701..1511288 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R9A04_RS07780 (B11531_15410) ctsP 1511292..1511900 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R9A04_RS07785 (B11531_15420) ctsD 1511893..1513305 (-) 1413 WP_100623664.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R9A04_RS07790 (B11531_15430) ctsR 1513283..1513594 (-) 312 WP_002870885.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45716.31 Da        Isoelectric Point: 9.0938

>NTDB_id=105505 R9A04_RS07765 WP_317729754.1 1507974..1509155(-) (ctsF) [Campylobacter jejuni strain BCH-11531]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENGNFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105505 R9A04_RS07765 WP_317729754.1 1507974..1509155(-) (ctsF) [Campylobacter jejuni strain BCH-11531]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGGTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985

Multiple sequence alignment