Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R9A04_RS07790 Genome accession   NZ_AP028402
Coordinates   1513283..1513594 (-) Length   103 a.a.
NCBI ID   WP_002870885.1    Uniprot ID   A0A430XS64
Organism   Campylobacter jejuni strain BCH-11531     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1508283..1518594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A04_RS07770 (B11531_15390) ctsE 1509152..1510711 (-) 1560 WP_317729755.1 GspE/PulE family protein Machinery gene
  R9A04_RS07775 (B11531_15400) ctsX 1510701..1511288 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R9A04_RS07780 (B11531_15410) ctsP 1511292..1511900 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R9A04_RS07785 (B11531_15420) ctsD 1511893..1513305 (-) 1413 WP_100623664.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R9A04_RS07790 (B11531_15430) ctsR 1513283..1513594 (-) 312 WP_002870885.1 hypothetical protein Machinery gene
  R9A04_RS07795 (B11531_15440) nifJ 1513618..1517178 (-) 3561 WP_002921284.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R9A04_RS07800 (B11531_15450) - 1517271..1517912 (-) 642 WP_002934763.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12445.35 Da        Isoelectric Point: 5.8722

>NTDB_id=105510 R9A04_RS07790 WP_002870885.1 1513283..1513594(-) (ctsR) [Campylobacter jejuni strain BCH-11531]
MCFSALFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105510 R9A04_RS07790 WP_002870885.1 1513283..1513594(-) (ctsR) [Campylobacter jejuni strain BCH-11531]
TTGTGTTTTAGCGCTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A430XS64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment