Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BCS84_RS06700 Genome accession   NZ_CP170046
Coordinates   1396202..1397590 (+) Length   462 a.a.
NCBI ID   WP_010437172.1    Uniprot ID   A0AAN0NB30
Organism   Vibrio cyclitrophicus strain 10N.222.45.E8     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391202..1402590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCS84_RS06685 (BCS84_06685) melB 1391608..1392981 (+) 1374 WP_010437169.1 melibiose:sodium transporter MelB -
  BCS84_RS06695 (BCS84_06695) uvrB 1393869..1395899 (+) 2031 WP_016767675.1 excinuclease ABC subunit UvrB -
  BCS84_RS06700 (BCS84_06700) luxO 1396202..1397590 (+) 1389 WP_010437172.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BCS84_RS06705 (BCS84_06705) luxU 1397615..1397959 (+) 345 WP_010437174.1 quorum-sensing phosphorelay protein LuxU -
  BCS84_RS06710 (BCS84_06710) - 1398040..1398927 (-) 888 WP_016793852.1 YvcK family protein -
  BCS84_RS06715 (BCS84_06715) moaA 1399263..1400252 (+) 990 WP_010437176.1 GTP 3',8-cyclase MoaA -
  BCS84_RS06720 (BCS84_06720) moaB 1400342..1400854 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  BCS84_RS06725 (BCS84_06725) moaC 1400867..1401346 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  BCS84_RS06730 (BCS84_06730) moaD 1401343..1401588 (+) 246 WP_010437182.1 molybdopterin synthase sulfur carrier subunit -
  BCS84_RS06735 (BCS84_06735) moaE 1401591..1402064 (+) 474 WP_016793853.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51715.26 Da        Isoelectric Point: 6.0301

>NTDB_id=1054932 BCS84_RS06700 WP_010437172.1 1396202..1397590(+) (luxO) [Vibrio cyclitrophicus strain 10N.222.45.E8]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIESSL
RLKEMQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1054932 BCS84_RS06700 WP_010437172.1 1396202..1397590(+) (luxO) [Vibrio cyclitrophicus strain 10N.222.45.E8]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCCGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTCATCTTATTAGATCTGCGCCTTCCTGATATGACGGGTATGGACGTACTATTTGCTGTAAAACAAAAATAC
CCAGAAGTCCCCGTTATCTTCATGACGGCTCACGGCTCTATCGATACCGCAGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATTAAACCTTGTGAAGCCGATCGACTCCGTATAACGGTGAATAACGCGATACGCAAAGCCACTAAACTGAAGA
ACAGTTCTGAAAACCCGGGTAATCAAAACTATCAAGGATTCATCGGTAGTAGCCAAACCATGCAGCAGGTTTATCGAACA
ATCGATTCCGCGGCATCGAGTAAAGCGAGTATTTTCATTACCGGTGAAAGTGGTACCGGAAAAGAGGTGTGTGCAGAAGC
GATTCACGCGGCGAGTAAGCGTGGTGATAAGCCATTCATTGCGATTAACTGTGCGGCTATTCCTAAAGATTTAATCGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCCTTTACTGGCGCTGCAACCGATCGTCAAGGTGCGGCTGAACTTGCCGATGGT
GGAACCTTGTTCCTCGATGAGTTGTGTGAGATGGATCTTGAGCTACAAACCAAGCTTTTGCGTTTTATTCAAACGGGCAC
TTTCCAAAAAGTAGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTTGTATGTGCAACCAACCGAGACCCTTGGAAAG
AAGTCCAAGAAGGTCGCTTTAGAGAAGATTTGTACTACCGTTTATATGTAATTCCACTGCACCTACCGCCATTGCGTGAG
CGTGGCGAGGATGTTATCGAGATTGCATATTCACTGCTGGGCTACATGTCTGTTGAGGAAGGTAAGGCCTTTGTTCGTTT
TGCTCAGGAAGTGCTGGACCGCTTTAACCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAATGTGTTGCGAAACG
TGGTGGTACTGAACAATGGTAAAGAGATTACCCTGAACATGCTTCCACCTCCACTGAACCAGCCGATTGAGAGCAGTCTG
CGGTTGAAAGAGATGCAAAATGAAGACATCACTGTAAAAGACATTTTCCCATTGTGGATCACTGAAAAAACAGCGATTGA
ACAGGCCATAAAAGCATGTGATGGCAACATCCCTCGTGCGGCAGGCTTCTTAGATGTCAGTCCATCGACGATATATCGTA
AGTTACAAACGTGGAATGCGAAGCAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

96.97

0.84
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment