Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R9A04_RS03055 Genome accession   NZ_AP028402
Coordinates   592267..593040 (+) Length   257 a.a.
NCBI ID   WP_317729906.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11531     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 587267..598040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A04_RS03040 (B11531_05940) - 588116..590050 (-) 1935 WP_052804452.1 RNB domain-containing ribonuclease -
  R9A04_RS03045 (B11531_05950) ilvC 590169..591191 (+) 1023 WP_032589477.1 ketol-acid reductoisomerase -
  R9A04_RS03050 (B11531_05960) - 591195..592277 (+) 1083 WP_317729905.1 divergent polysaccharide deacetylase family protein -
  R9A04_RS03055 (B11531_05970) dprA 592267..593040 (+) 774 WP_317729906.1 DNA-processing protein DprA Machinery gene
  R9A04_RS03060 (B11531_05980) ruvX 593037..593420 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX -
  R9A04_RS03065 (B11531_05990) - 593449..594288 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R9A04_RS03070 (B11531_06000) msrA 594464..594961 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R9A04_RS03075 (B11531_06010) ppa 595002..595520 (-) 519 WP_075479863.1 inorganic diphosphatase -
  R9A04_RS03080 (B11531_06020) adk 595530..596108 (-) 579 WP_002855137.1 adenylate kinase -
  R9A04_RS03085 (B11531_06030) aspS 596105..597856 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28814.58 Da        Isoelectric Point: 7.0851

>NTDB_id=105491 R9A04_RS03055 WP_317729906.1 592267..593040(+) (dprA) [Campylobacter jejuni strain BCH-11531]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SIAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIDLSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKTKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLV

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105491 R9A04_RS03055 WP_317729906.1 592267..593040(+) (dprA) [Campylobacter jejuni strain BCH-11531]
ATGGCAAGTGAAATTTTACCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAACCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGCATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGTGGTGCTTTGGGTGTGGATATCACCGCA
AGTATAGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGATTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGCACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAACAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATCGAAGGGCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.047

99.611

0.977
  dprA Helicobacter pylori 26695

48.333

93.385

0.451

Multiple sequence alignment