Detailed information NTG1054827

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCT87_RS04355
• Genome accession: NZ_CP170031
• Coordinates: 1047115..1048095 (-)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.261.52.C4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1042115..1053095

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCT87_RS04340 (BCT87_04340)	recA	1042646..1043686 (-)	1041	WP_010435812.1	recombinase RecA	Machinery gene
BCT87_RS04345 (BCT87_04345)	pncC	1043826..1044320 (-)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCT87_RS04350 (BCT87_04350)	mutS	1044444..1047005 (+)	2562	WP_016768193.1	DNA mismatch repair protein MutS	-
BCT87_RS04355 (BCT87_04355)	rpoS	1047115..1048095 (-)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCT87_RS04360 (BCT87_04360)	nlpD	1048194..1049126 (-)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCT87_RS04365 (BCT87_04365)	-	1049162..1049788 (-)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCT87_RS04370 (BCT87_04370)	surE	1049789..1050532 (-)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCT87_RS04375 (BCT87_04375)	truD	1050608..1051654 (-)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCT87_RS04380 (BCT87_04380)	ispF	1051677..1052156 (-)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCT87_RS04385 (BCT87_04385)	ispD	1052159..1052860 (-)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054827 BCT87_RS04355 WP_010435803.1 1047115..1048095(-) (rpoS) [Vibrio cyclitrophicus strain 10N.261.52.C4]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054827 BCT87_RS04355 WP_010435803.1 1047115..1048095(-) (rpoS) [Vibrio cyclitrophicus strain 10N.261.52.C4]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834