Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BCT87_RS04130 Genome accession   NZ_CP170031
Coordinates   1002631..1003236 (+) Length   201 a.a.
NCBI ID   WP_032547945.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.261.52.C4     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 997631..1008236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCT87_RS04110 (BCT87_04110) - 997831..998748 (-) 918 WP_016768216.1 ABC transporter ATP-binding protein -
  BCT87_RS04115 (BCT87_04115) - 999099..1000730 (-) 1632 WP_016786429.1 SulP family inorganic anion transporter -
  BCT87_RS04120 (BCT87_04120) can 1001017..1001676 (+) 660 WP_010435977.1 carbonate dehydratase -
  BCT87_RS04125 (BCT87_04125) hpt 1001763..1002293 (-) 531 WP_010435974.1 hypoxanthine phosphoribosyltransferase -
  BCT87_RS04130 (BCT87_04130) opaR 1002631..1003236 (+) 606 WP_032547945.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  BCT87_RS04135 (BCT87_04135) lpdA 1003603..1005033 (-) 1431 WP_010435969.1 dihydrolipoyl dehydrogenase -
  BCT87_RS04140 (BCT87_04140) aceF 1005276..1007168 (-) 1893 WP_102305896.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23256.51 Da        Isoelectric Point: 6.0730

>NTDB_id=1054820 BCT87_RS04130 WP_032547945.1 1002631..1003236(+) (opaR) [Vibrio cyclitrophicus strain 10N.261.52.C4]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVANDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1054820 BCT87_RS04130 WP_032547945.1 1002631..1003236(+) (opaR) [Vibrio cyclitrophicus strain 10N.261.52.C4]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGTGGTGGGCACGCTGATATAGCTGACATTGCTCAGGTATCAGTTGCAACCGTGT
TTAACTACTTCCCAACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTCGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTCGATATTCACGCAAAAGAGAACTTACATAATATTGCGACTGAAATGGTGACGTTGGTGGCTAACGA
TTGCCATTGGTTGAATGTATGGTTTGAATGGAGCGCATCAACCCGTGATGAAGTATGGCCTCTATTCGTAACCACAAACC
GCACTAACCAAATGTTACTACAAAACATGTTTAGCAAAGCGATAGAGCGTGGCGAAGTCTGTGACGACCACGACCCTAAG
CACCTTGCGAATCTGTTCCACGGCATTTGTTACTCGCTATTCATTCAAGCGAAGCGTGTAGATACGCAAGAAGAACTTTC
GACCTTGACGGATAGCTACTTAAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

74.372

99.005

0.736
  hapR Vibrio cholerae strain A1552

74.372

99.005

0.736

Multiple sequence alignment