Detailed information NTG1054742

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCU19_RS04370
• Genome accession: NZ_CP170025
• Coordinates: 881478..882347 (-)
• Length: 289 a.a.
• NCBI ID: WP_016793488.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.261.55.E6
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 876478..887347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU19_RS04335 (BCU19_04335)	rpsP	877526..877774 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
BCU19_RS04340 (BCU19_04340)	rimM	877799..878353 (+)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCU19_RS04345 (BCU19_04345)	trmD	878380..879120 (+)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCU19_RS04350 (BCU19_04350)	rplS	879180..879533 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
BCU19_RS04355 (BCU19_04355)	yacG	879815..880012 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCU19_RS04360 (BCU19_04360)	zapD	880094..880834 (-)	741	WP_010435917.1	cell division protein ZapD	-
BCU19_RS04365 (BCU19_04365)	coaE	880861..881475 (-)	615	WP_016793489.1	dephospho-CoA kinase	-
BCU19_RS04370 (BCU19_04370)	pilD	881478..882347 (-)	870	WP_016793488.1	prepilin peptidase	Machinery gene
BCU19_RS04375 (BCU19_04375)	pilC	882414..883643 (-)	1230	WP_016793487.1	type II secretion system F family protein	Machinery gene
BCU19_RS04380 (BCU19_04380)	pilB	883658..885346 (-)	1689	WP_016793486.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCU19_RS04385 (BCU19_04385)	pilA	885348..885758 (-)	411	WP_016793485.1	pilin	Machinery gene
BCU19_RS04390 (BCU19_04390)	nadC	886010..886900 (-)	891	WP_016768207.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32557.77 Da
• Isoelectric Point: 7.6347

>NTDB_id=1054742 BCU19_RS04370 WP_016793488.1 881478..882347(-) (pilD) [Vibrio cyclitrophicus strain 10N.261.55.E6]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRVI
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054742 BCU19_RS04370 WP_016793488.1 881478..882347(-) (pilD) [Vibrio cyclitrophicus strain 10N.261.55.E6]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGTAGTTTTCTCAA
CGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGGAAGTTTAACCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTAAGAGTAATC
GACAACATCCCGGTATTAAGCTGGTTATTCCTAAAGGGCAAGTGCCACAGTTGTGCTAACCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTTGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCGCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTATTGCCAGATCAAATCACCTTGCCT
TTAGTTTGGTCTGGTATCGCTTTAGCACTGTTTAATATCAGCCCGGTATCGCTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTATCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGATAAAGCCTTTCCGTTTGGCCCCTACCTTGCGATTGC
GGGATGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	69.444	99.654	0.692
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436