Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BCU28_RS11655 Genome accession   NZ_CP170022
Coordinates   2625813..2627201 (-) Length   462 a.a.
NCBI ID   WP_016790353.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.45.B7     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620813..2632201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU28_RS11620 (BCU28_11620) moaE 2621339..2621812 (-) 474 WP_016783809.1 molybdopterin synthase catalytic subunit MoaE -
  BCU28_RS11625 (BCU28_11625) moaD 2621815..2622060 (-) 246 WP_016783808.1 molybdopterin synthase sulfur carrier subunit -
  BCU28_RS11630 (BCU28_11630) moaC 2622057..2622536 (-) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  BCU28_RS11635 (BCU28_11635) moaB 2622549..2623061 (-) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  BCU28_RS11640 (BCU28_11640) moaA 2623151..2624140 (-) 990 WP_010437176.1 GTP 3',8-cyclase MoaA -
  BCU28_RS11645 (BCU28_11645) - 2624476..2625363 (+) 888 WP_016790354.1 YvcK family protein -
  BCU28_RS11650 (BCU28_11650) luxU 2625444..2625788 (-) 345 WP_010437174.1 quorum-sensing phosphorelay protein LuxU -
  BCU28_RS11655 (BCU28_11655) luxO 2625813..2627201 (-) 1389 WP_016790353.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BCU28_RS11660 (BCU28_11660) uvrB 2627504..2629534 (-) 2031 WP_016767675.1 excinuclease ABC subunit UvrB -
  BCU28_RS11670 (BCU28_11670) rsxA 2630607..2631185 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  BCU28_RS11675 (BCU28_11675) rsxB 2631188..2631781 (+) 594 WP_004734040.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51657.23 Da        Isoelectric Point: 6.2724

>NTDB_id=1054696 BCU28_RS11655 WP_016790353.1 2625813..2627201(-) (luxO) [Vibrio cyclitrophicus strain 10N.286.45.B7]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIESSL
RLKEMQNEGITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1054696 BCU28_RS11655 WP_016790353.1 2625813..2627201(-) (luxO) [Vibrio cyclitrophicus strain 10N.286.45.B7]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCCGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTCATCTTATTAGATCTGCGCCTTCCTGATATGACGGGTATGGACGTACTATTTGCTGTAAAACAAAAATAC
CCAGAAGTCCCCGTTATCTTCATGACGGCTCACGGCTCTATCGATACCGCAGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATTAAACCTTGTGAAGCCGATCGACTCCGTATAACGGTGAATAACGCGATACGCAAAGCCACTAAACTGAAGA
ACAGTTCTGAAAACCCGGGTAATCAAAACTATCAAGGATTCATCGGTAGTAGCCAAACCATGCAGCAGGTTTATCGAACT
ATCGATTCCGCGGCATCGAGTAAAGCGAGTATTTTCATTACCGGTGAAAGTGGTACCGGAAAAGAGGTGTGTGCAGAAGC
GATTCACGCGGCGAGTAAGCGTGGTGATAAGCCATTCATTGCGATTAACTGTGCGGCTATTCCTAAAGATTTAATCGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCCTTTACTGGCGCTGCAACCGATCGTCAAGGTGCGGCTGAACTTGCCGATGGT
GGAACCTTGTTCCTCGATGAGTTGTGTGAGATGGATCTTGAGCTACAAACCAAGCTTTTGCGTTTTATTCAAACGGGTAC
TTTCCAAAAAGTAGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTTGTATGTGCAACCAACCGAGACCCTTGGAAAG
AAGTCCAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGTTTATATGTAATTCCACTGCACCTACCGCCATTGCGTGAG
CGTGGCGAGGATGTTATCGAGATTGCATATTCACTGCTGGGCTACATGTCTGTTGAGGAAGGTAAGGCCTTTGTTCGTTT
TGCTCAGGAAGTGCTGGACCGCTTTAACCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAATGTGTTGCGAAACG
TGGTGGTACTGAACAATGGTAAAGAGATTACCCTGAACATGCTTCCACCTCCACTGAACCAGCCGATTGAGAGCAGTCTG
CGGTTGAAAGAGATGCAAAATGAAGGCATCACTGTAAAAGACATTTTCCCATTGTGGATCACTGAAAAAACAGCGATTGA
ACAGGCCATAAAAGCATGTGATGGCAACATCCCTCGTGCGGCAGGCTTCTTAGATGTCAGTCCATCGACGATATATCGTA
AGTTACAAACGTGGAATGCGAAGCAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

96.97

0.84
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment