Detailed information NTG1054647

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BCU67_RS04155
• Genome accession: NZ_CP170019
• Coordinates: 833982..834962 (+)
• Length: 326 a.a.
• NCBI ID: WP_010435803.1
• Uniprot ID: A0AAN0N9Q1
• Organism: Vibrio cyclitrophicus strain 10N.286.49.B11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 828982..839962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU67_RS04125 (BCU67_04125)	ispD	829217..829918 (+)	702	WP_010435790.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BCU67_RS04130 (BCU67_04130)	ispF	829921..830400 (+)	480	WP_010435793.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BCU67_RS04135 (BCU67_04135)	truD	830423..831469 (+)	1047	WP_010435794.1	tRNA pseudouridine(13) synthase TruD	-
BCU67_RS04140 (BCU67_04140)	surE	831545..832288 (+)	744	WP_010435796.1	5'/3'-nucleotidase SurE	-
BCU67_RS04145 (BCU67_04145)	-	832289..832915 (+)	627	WP_010435798.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BCU67_RS04150 (BCU67_04150)	nlpD	832951..833883 (+)	933	WP_016768192.1	murein hydrolase activator NlpD	-
BCU67_RS04155 (BCU67_04155)	rpoS	833982..834962 (+)	981	WP_010435803.1	RNA polymerase sigma factor RpoS	Regulator
BCU67_RS04160 (BCU67_04160)	mutS	835072..837633 (-)	2562	WP_102277673.1	DNA mismatch repair protein MutS	-
BCU67_RS04165 (BCU67_04165)	pncC	837757..838251 (+)	495	WP_016768194.1	nicotinamide-nucleotide amidase	-
BCU67_RS04170 (BCU67_04170)	recA	838391..839431 (+)	1041	WP_010435812.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37267.52 Da
• Isoelectric Point: 5.2707

>NTDB_id=1054647 BCU67_RS04155 WP_010435803.1 833982..834962(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.49.B11]
MSISNAVTKEEFDLNQVTTESETLGKAKRTVTKKTEAKEEAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=1054647 BCU67_RS04155 WP_010435803.1 833982..834962(+) (rpoS) [Vibrio cyclitrophicus strain 10N.286.49.B11]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTTGATCTTAACCAAGTAACCACGGAATCGGAAACACTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGCTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAACTCT
ACTTAGGCGAAATTGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCGGCCCGCAAACGCATGATTGAAAGTAACCTGCGTTTGGTGGTTAAAATATCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGAGGTTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACAGCAAGAGAGTTATCACAAAAGCTTGACCATGAACCAAC
GGCTGAAGAAATTGCTACTAAGCTAGACAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTTTAAACGAGCGAGTGAGCT
CCGTTGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCGGACATCAACAATTCCGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTAGATGAGCTGAACCCGAAACAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTTGGCTATGAACCGTCAACGTTAGAAGAAGTAGGCCGTGAAATCTGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGAGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTTAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834