Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8588_RS02930 Genome accession   NZ_AP028401
Coordinates   553452..554102 (-) Length   216 a.a.
NCBI ID   WP_057035928.1    Uniprot ID   A0AAX2M1G0
Organism   Campylobacter jejuni strain BCH-11527     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 548452..559102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8588_RS02895 (B11527_05720) - 548830..549834 (+) 1005 WP_002852264.1 membrane protein -
  R8588_RS02900 (B11527_05730) tlyA 549831..550592 (+) 762 WP_317650103.1 TlyA family RNA methyltransferase -
  R8588_RS02905 (B11527_05740) ribF 550558..551412 (+) 855 WP_317650104.1 bifunctional riboflavin kinase/FAD synthetase -
  R8588_RS02910 (B11527_05750) cmoA 551399..552109 (+) 711 WP_079254426.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8588_RS02915 (B11527_05760) - 552099..552320 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8588_RS02920 (B11527_05770) - 552317..552751 (-) 435 WP_002875883.1 EexN family lipoprotein -
  R8588_RS02925 (B11527_05780) - 552809..553441 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R8588_RS02930 (B11527_05790) CJE0566 553452..554102 (-) 651 WP_057035928.1 DNA/RNA non-specific endonuclease Regulator
  R8588_RS02935 (B11527_05800) nth 554099..554725 (-) 627 WP_002852225.1 endonuclease III -
  R8588_RS02940 (B11527_05810) peb4 554806..555627 (+) 822 WP_020246902.1 peptidylprolyl isomerase PEB4 -
  R8588_RS02945 (B11527_05820) fbaA 555627..556691 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  R8588_RS02950 (B11527_05830) - 556786..558228 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25486.13 Da        Isoelectric Point: 9.6573

>NTDB_id=105463 R8588_RS02930 WP_057035928.1 553452..554102(-) (CJE0566) [Campylobacter jejuni strain BCH-11527]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKIEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105463 R8588_RS02930 WP_057035928.1 553452..554102(-) (CJE0566) [Campylobacter jejuni strain BCH-11527]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGATAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment