Detailed information NTG0105458

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: D082_RS08965
• Genome accession: NZ_CP007542
• Coordinates: 1957988..1959142 (-)
• Length: 384 a.a.
• NCBI ID: WP_028947993.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6714
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1952988..1964142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D082_RS08940 (D082_19860)	ribH	1954385..1954885 (-)	501	WP_028947996.1	6,7-dimethyl-8-ribityllumazine synthase	-
D082_RS08945 (D082_19870)	psbZ	1955009..1955197 (-)	189	WP_014407093.1	photosystem II reaction center protein PsbZ	-
D082_RS17730	-	1955521..1956396 (-)	876	WP_369796106.1	M48 family metallopeptidase	-
D082_RS08960 (D082_19890)	-	1956821..1957804 (+)	984	WP_028947994.1	30S ribosomal protein S1	-
D082_RS08965 (D082_19900)	recF	1957988..1959142 (-)	1155	WP_028947993.1	DNA replication/repair protein RecF	Machinery gene
D082_RS08970 (D082_19910)	-	1959184..1960923 (-)	1740	WP_028947992.1	ABC transporter ATP-binding protein	-
D082_RS08975 (D082_19920)	rpmI	1961234..1961437 (+)	204	WP_028947991.1	50S ribosomal protein L35	-
D082_RS08980 (D082_19930)	rplT	1961572..1961925 (+)	354	WP_028947990.1	50S ribosomal protein L20	-
D082_RS08985 (D082_19940)	lpxD	1962034..1963068 (-)	1035	WP_028947989.1	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 43771.86 Da
• Isoelectric Point: 6.3193

>NTDB_id=105458 D082_RS08965 WP_028947993.1 1957988..1959142(-) (recF) [Synechocystis sp. PCC 6714]
MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLRSHRTSRDQELVLDGAASGQIKALLERQYSV
AELEIGLRRSGRRNLRINQNQCRRQLDFLGCLNAVEFSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQ
RNALLKSLRQQWETDLTLGEELAASLGLWNQQLVEMGTRVARRRARGLARLAPLAQEWHGRISGGNETLTVTYQPSVAWE
GDDPEVLQQAFLTRLEQRRSAELHLGTTVVGPHRDEVEFTIDATPARTYGSQGQHRTLVLALKLAELSLIETVIGEPPLL
LLDDVLAELDLDRQGQLLMAIEDRFQTLITTTHLNRFDDRWRRSAQIIKVNGGQLEEKWPSEID

Nucleotide

• Length: 1155 bp

>NTDB_id=105458 D082_RS08965 WP_028947993.1 1957988..1959142(-) (recF) [Synechocystis sp. PCC 6714]
ATGTACTTAAAAAAACTCTATTTACGGGCCTTCCGTAATTACCTTGAAGAAGAAGTGGAATTTTCTGCCCAAAAAACCAT
TTTGGTGGGCAATAATGCCCAGGGTAAATCTAACTTATTGGAAGCGGTGGAACTGTTAGCAACATTAAGGAGCCATCGCA
CCAGCCGGGACCAAGAATTAGTTTTAGATGGGGCCGCCAGTGGCCAAATTAAAGCTCTATTGGAAAGACAATACAGCGTG
GCAGAGTTGGAAATCGGCCTACGGCGATCGGGTCGGCGCAATTTACGCATTAACCAAAACCAATGTCGCCGTCAGCTGGA
TTTTCTGGGGTGTTTAAATGCGGTGGAATTTTCTTGTTTAGACTTAGATTTAGTCCGGGGAGCACCGGATTGTCGCCGCC
AATGGTTAGATACGCTATTAACTCAGCTAGAACCCCTCTATGCCCATCTCTTGGGACAGTACCAACACATTGTTAAGCAA
AGAAATGCTTTGTTAAAAAGCCTGCGTCAACAGTGGGAAACGGATTTAACTTTGGGGGAAGAATTAGCCGCTTCCCTAGG
CCTGTGGAATCAACAGTTGGTGGAAATGGGCACTAGGGTGGCCCGCCGTCGAGCTAGGGGTTTGGCCCGCCTTGCCCCTT
TGGCCCAGGAATGGCATGGGCGCATCAGTGGCGGCAATGAAACCCTGACCGTCACCTATCAACCCAGTGTGGCCTGGGAG
GGGGATGATCCAGAGGTGCTCCAACAGGCTTTTTTGACCAGATTGGAACAACGGCGATCGGCAGAATTGCATTTAGGGAC
AACGGTGGTGGGCCCCCATCGGGATGAGGTTGAGTTCACCATTGATGCTACCCCCGCCAGAACCTATGGCTCCCAGGGAC
AGCATCGTACTCTAGTACTGGCATTGAAGTTGGCCGAATTAAGTTTAATCGAAACGGTAATCGGCGAACCGCCCCTATTG
TTATTGGATGATGTGTTAGCGGAGTTAGACCTCGATCGCCAGGGGCAATTATTGATGGCCATTGAAGACCGCTTTCAAAC
CCTGATCACCACCACCCATCTAAATCGTTTTGATGACCGCTGGCGGCGATCGGCCCAGATAATTAAGGTTAATGGAGGTC
AACTGGAGGAAAAGTGGCCTTCGGAAATTGACTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	38.482	99.479	0.383
recF	Streptococcus pneumoniae R6	40.169	92.708	0.372