Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   BCV09_RS04425 Genome accession   NZ_CP170013
Coordinates   924534..925922 (+) Length   462 a.a.
NCBI ID   WP_010437172.1    Uniprot ID   A0AAN0NB30
Organism   Vibrio cyclitrophicus strain 10N.286.54.C7     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 919534..930922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV09_RS04405 (BCV09_04405) rsxB 920073..920666 (-) 594 WP_016783807.1 electron transport complex subunit RsxB -
  BCV09_RS04410 (BCV09_04410) rsxA 920669..921247 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  BCV09_RS04420 (BCV09_04420) uvrB 922201..924231 (+) 2031 WP_016767675.1 excinuclease ABC subunit UvrB -
  BCV09_RS04425 (BCV09_04425) luxO 924534..925922 (+) 1389 WP_010437172.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  BCV09_RS04430 (BCV09_04430) luxU 925947..926291 (+) 345 WP_010437174.1 quorum-sensing phosphorelay protein LuxU -
  BCV09_RS04435 (BCV09_04435) - 926371..927258 (-) 888 WP_010437175.1 YvcK family protein -
  BCV09_RS04440 (BCV09_04440) moaA 927595..928584 (+) 990 WP_010437176.1 GTP 3',8-cyclase MoaA -
  BCV09_RS04445 (BCV09_04445) moaB 928674..929186 (+) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  BCV09_RS04450 (BCV09_04450) moaC 929199..929678 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  BCV09_RS04455 (BCV09_04455) moaD 929675..929920 (+) 246 WP_016783808.1 molybdopterin synthase sulfur carrier subunit -
  BCV09_RS04460 (BCV09_04460) moaE 929923..930396 (+) 474 WP_016783809.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51715.26 Da        Isoelectric Point: 6.0301

>NTDB_id=1054514 BCV09_RS04425 WP_010437172.1 924534..925922(+) (luxO) [Vibrio cyclitrophicus strain 10N.286.54.C7]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIESSL
RLKEMQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1054514 BCV09_RS04425 WP_010437172.1 924534..925922(+) (luxO) [Vibrio cyclitrophicus strain 10N.286.54.C7]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCCGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTCATCTTATTAGATCTGCGCCTTCCTGATATGACGGGTATGGACGTACTATTTGCTGTAAAACAAAAATAC
CCAGAAGTCCCCGTTATCTTCATGACGGCTCACGGCTCTATCGATACCGCAGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATTAAACCTTGTGAAGCCGATCGACTCCGTATAACGGTGAATAACGCGATACGCAAAGCCACTAAACTGAAGA
ACAGTTCTGAAAACCCGGGTAATCAAAACTATCAAGGATTCATCGGTAGTAGCCAAACCATGCAGCAGGTTTATCGAACT
ATCGATTCCGCGGCATCGAGTAAAGCGAGTATTTTCATTACCGGTGAAAGTGGTACCGGAAAAGAGGTGTGTGCAGAAGC
GATTCACGCGGCGAGTAAGCGTGGTGATAAGCCATTCATTGCGATTAACTGTGCGGCTATTCCTAAAGATTTAATCGAAA
GTGAGCTGTTTGGTCACGTAAAAGGTGCCTTTACTGGCGCTGCAACCGATCGTCAAGGTGCGGCTGAACTTGCCGATGGT
GGAACCTTGTTCCTCGATGAGTTGTGTGAGATGGATCTTGAGCTACAAACCAAGCTTTTGCGTTTTATTCAAACGGGTAC
TTTCCAAAAAGTAGGCTCTTCGAAGATGAAGAGTGTGGATGTTCGTTTTGTATGTGCAACCAACCGAGACCCTTGGAAAG
AAGTCCAAGAAGGTCGCTTTAGAGAAGATTTATACTACCGTTTATATGTAATTCCACTGCACCTACCGCCATTGCGTGAG
CGTGGCGAGGATGTTATCGAGATTGCATATTCACTGCTGGGCTACATGTCTGTTGAGGAAGGTAAGGCCTTTGTTCGTTT
TGCTCAGGAAGTGCTGGACCGCTTTAACCAATACGAGTGGCCGGGTAACGTTCGTCAGCTACAAAATGTGTTGCGAAACG
TGGTGGTACTGAACAATGGTAAAGAGATTACCCTGAACATGCTTCCACCTCCACTGAACCAGCCGATTGAGAGCAGTCTG
CGGTTGAAAGAGATGCAAAATGAAGACATCACTGTAAAAGACATTTTCCCATTGTGGATCACTGAAAAAACAGCGATTGA
ACAGGCCATAAAAGCATGTGATGGCAACATCCCTCGTGCGGCAGGCTTCTTAGATGTCAGTCCATCGACGATATATCGTA
AGTTACAAACGTGGAATGCGAAGCAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

96.97

0.84
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment