Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   BCV18_RS10490 Genome accession   NZ_CP170009
Coordinates   2261234..2261839 (-) Length   201 a.a.
NCBI ID   WP_010435971.1    Uniprot ID   A0AAN0LMY6
Organism   Vibrio cyclitrophicus strain 10N.286.54.F2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2256234..2266839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV18_RS10480 (BCV18_10480) aceF 2257247..2259145 (+) 1899 WP_016786430.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  BCV18_RS10485 (BCV18_10485) lpdA 2259388..2260818 (+) 1431 WP_010435969.1 dihydrolipoyl dehydrogenase -
  BCV18_RS10490 (BCV18_10490) opaR 2261234..2261839 (-) 606 WP_010435971.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  BCV18_RS10495 (BCV18_10495) hpt 2262177..2262707 (+) 531 WP_010435974.1 hypoxanthine phosphoribosyltransferase -
  BCV18_RS10500 (BCV18_10500) can 2262794..2263453 (-) 660 WP_010435977.1 carbonate dehydratase -
  BCV18_RS10505 (BCV18_10505) - 2263740..2265362 (+) 1623 WP_010435979.1 SulP family inorganic anion transporter -
  BCV18_RS10510 (BCV18_10510) - 2265702..2266619 (+) 918 WP_010435984.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23279.55 Da        Isoelectric Point: 6.2190

>NTDB_id=1054436 BCV18_RS10490 WP_010435971.1 2261234..2261839(-) (opaR) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAHDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1054436 BCV18_RS10490 WP_010435971.1 2261234..2261839(-) (opaR) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGTGGTGGGCACGCTGATATAGCTGACATTGCTCAGGTATCAGTTGCAACCGTGT
TTAACTACTTCCCAACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTCGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTCGATATTCACGCAAAAGAGAACTTACATAATATTGCGACTGAAATGGTGACGTTGGTGGCTCACGA
TTGCCATTGGTTGAATGTATGGTTTGAATGGAGCGCATCAACCCGTGATGAAGTATGGCCTCTATTCGTAACCACAAACC
GCACTAACCAAATGTTACTACAAAACATGTTTAGCAAAGCGATAGAGCGTGGCGAAGTCTGTGACGACCACGACCCTAAG
CACCTTGCGAATCTGTTCCACGGCATTTGTTACTCGCTATTCATTCAAGCGAAGCGTGTAGATACGCAAGAAGAACTTTC
GACCTTGACGGATAGCTACTTAAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

74.372

99.005

0.736
  hapR Vibrio cholerae strain A1552

74.372

99.005

0.736

Multiple sequence alignment