Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | BCV18_RS09065 | Genome accession | NZ_CP170009 |
| Coordinates | 2004876..2005490 (+) | Length | 204 a.a. |
| NCBI ID | WP_016767987.1 | Uniprot ID | A0A7Z1MKE0 |
| Organism | Vibrio cyclitrophicus strain 10N.286.54.F2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1999876..2010490
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV18_RS09050 (BCV18_09050) | oxyR | 2000168..2001061 (+) | 894 | WP_010435297.1 | DNA-binding transcriptional regulator OxyR | - |
| BCV18_RS09055 (BCV18_09055) | - | 2001157..2003715 (-) | 2559 | WP_010435294.1 | penicillin-binding protein 1A | - |
| BCV18_RS09060 (BCV18_09060) | pilM | 2003867..2004892 (+) | 1026 | WP_016767986.1 | type IV pilus assembly protein PilM | Machinery gene |
| BCV18_RS09065 (BCV18_09065) | pilN | 2004876..2005490 (+) | 615 | WP_016767987.1 | PilN domain-containing protein | Machinery gene |
| BCV18_RS09070 (BCV18_09070) | pilO | 2005483..2006112 (+) | 630 | WP_010435284.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BCV18_RS09075 (BCV18_09075) | pilP | 2006099..2006617 (+) | 519 | WP_016767989.1 | pilus assembly protein PilP | Machinery gene |
| BCV18_RS09080 (BCV18_09080) | pilQ | 2006677..2008368 (+) | 1692 | WP_010435279.1 | type IV pilus secretin PilQ | Machinery gene |
| BCV18_RS09085 (BCV18_09085) | aroK | 2008545..2009063 (+) | 519 | WP_009848907.1 | shikimate kinase AroK | - |
| BCV18_RS09090 (BCV18_09090) | aroB | 2009088..2010176 (+) | 1089 | WP_010435273.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23331.79 Da Isoelectric Point: 9.3072
>NTDB_id=1054420 BCV18_RS09065 WP_016767987.1 2004876..2005490(+) (pilN) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MLHQINLLSWRDEIRAQHKKRFIHLVILGVIIALAGQWAVGHYFHDQQAKQQARLSYLDKYIGVLDRQIQSLKVAEQEHK
AILTRLAVVESLQFGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSDSLKEVEMHSIV
HNRKRFNKEFQSFKVSFVFSPVSLENTTAEGTTANIKEKGANHG
MLHQINLLSWRDEIRAQHKKRFIHLVILGVIIALAGQWAVGHYFHDQQAKQQARLSYLDKYIGVLDRQIQSLKVAEQEHK
AILTRLAVVESLQFGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSDSLKEVEMHSIV
HNRKRFNKEFQSFKVSFVFSPVSLENTTAEGTTANIKEKGANHG
Nucleotide
Download Length: 615 bp
>NTDB_id=1054420 BCV18_RS09065 WP_016767987.1 2004876..2005490(+) (pilN) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGTTGCATCAAATTAACCTGTTGTCGTGGCGTGATGAGATTCGCGCTCAGCATAAAAAGCGTTTCATTCATCTGGTCAT
TCTTGGCGTCATCATTGCGCTTGCCGGGCAATGGGCGGTGGGACACTATTTTCATGACCAACAAGCCAAGCAGCAAGCGC
GCCTCAGTTATCTCGATAAGTACATCGGAGTGCTCGACCGACAAATCCAGTCATTAAAAGTCGCAGAGCAAGAGCACAAA
GCCATCCTTACACGACTTGCTGTCGTGGAGTCTTTACAGTTCGGGCGCAATAAAACCACCGACTTTATGAACCTGATGCC
GGAGCTGATTCCTGAGGGCGTGTATGTCGACAAGATAAAGATGAATGGTCAGGAGATTGAAATGTCGGGCATCAGCGACA
GCACCGCTCGTCTAGCCACCATGTTGGACAACCTAGAACGTTCTGACTCTCTTAAAGAAGTTGAGATGCACTCTATTGTT
CATAACCGTAAGCGCTTCAATAAAGAGTTTCAGAGCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTTTCTTTAGAAAACAC
AACCGCAGAGGGCACAACTGCGAACATAAAAGAGAAGGGGGCGAATCATGGCTAA
ATGTTGCATCAAATTAACCTGTTGTCGTGGCGTGATGAGATTCGCGCTCAGCATAAAAAGCGTTTCATTCATCTGGTCAT
TCTTGGCGTCATCATTGCGCTTGCCGGGCAATGGGCGGTGGGACACTATTTTCATGACCAACAAGCCAAGCAGCAAGCGC
GCCTCAGTTATCTCGATAAGTACATCGGAGTGCTCGACCGACAAATCCAGTCATTAAAAGTCGCAGAGCAAGAGCACAAA
GCCATCCTTACACGACTTGCTGTCGTGGAGTCTTTACAGTTCGGGCGCAATAAAACCACCGACTTTATGAACCTGATGCC
GGAGCTGATTCCTGAGGGCGTGTATGTCGACAAGATAAAGATGAATGGTCAGGAGATTGAAATGTCGGGCATCAGCGACA
GCACCGCTCGTCTAGCCACCATGTTGGACAACCTAGAACGTTCTGACTCTCTTAAAGAAGTTGAGATGCACTCTATTGTT
CATAACCGTAAGCGCTTCAATAAAGAGTTTCAGAGCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTTTCTTTAGAAAACAC
AACCGCAGAGGGCACAACTGCGAACATAAAAGAGAAGGGGGCGAATCATGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
63.731 |
94.608 |
0.603 |
| pilN | Vibrio campbellii strain DS40M4 |
61.78 |
93.627 |
0.578 |