Detailed information NTG1054419

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: BCV18_RS09060
• Genome accession: NZ_CP170009
• Coordinates: 2003867..2004892 (+)
• Length: 341 a.a.
• NCBI ID: WP_016767986.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.54.F2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1998867..2009892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV18_RS09045 (BCV18_09045)	-	1999218..1999946 (-)	729	WP_010435300.1	glutathione peroxidase	-
BCV18_RS09050 (BCV18_09050)	oxyR	2000168..2001061 (+)	894	WP_010435297.1	DNA-binding transcriptional regulator OxyR	-
BCV18_RS09055 (BCV18_09055)	-	2001157..2003715 (-)	2559	WP_010435294.1	penicillin-binding protein 1A	-
BCV18_RS09060 (BCV18_09060)	pilM	2003867..2004892 (+)	1026	WP_016767986.1	type IV pilus assembly protein PilM	Machinery gene
BCV18_RS09065 (BCV18_09065)	pilN	2004876..2005490 (+)	615	WP_016767987.1	PilN domain-containing protein	Machinery gene
BCV18_RS09070 (BCV18_09070)	pilO	2005483..2006112 (+)	630	WP_010435284.1	type 4a pilus biogenesis protein PilO	Machinery gene
BCV18_RS09075 (BCV18_09075)	pilP	2006099..2006617 (+)	519	WP_016767989.1	pilus assembly protein PilP	Machinery gene
BCV18_RS09080 (BCV18_09080)	pilQ	2006677..2008368 (+)	1692	WP_010435279.1	type IV pilus secretin PilQ	Machinery gene
BCV18_RS09085 (BCV18_09085)	aroK	2008545..2009063 (+)	519	WP_009848907.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38112.77 Da
• Isoelectric Point: 6.8348

>NTDB_id=1054419 BCV18_RS09060 WP_016767986.1 2003867..2004892(+) (pilM) [Vibrio cyclitrophicus strain 10N.286.54.F2]
MGSSLITGIDINHHSIKAVVLKPVGESYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGSRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGATSSYQVYATRKEVVDSRADALTKAGFKP
IVVDTQAHGLLNIWQLASHLYPEKKNWLLVDVGVDQTSLGIIPQGSAPFYKDIAFGIQDLCSTGNSMDMEGGFSNVEEKH
KFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASMPMVVEELERHFQLSCESLNPLSLFENKVAKKRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide

• Length: 1026 bp

>NTDB_id=1054419 BCV18_RS09060 WP_016767986.1 2003867..2004892(+) (pilM) [Vibrio cyclitrophicus strain 10N.286.54.F2]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCACCACAGCATCAAAGCCGTGGTACTAAAACCCGTTGGGGAGTC
GTATGCCCTGGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGGCTGCCTTTTGGAAGCCGCAACGTCGCTATTTCGGTACCGGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGCGAATTAGAAGATAGAGAAAAGGAGTTCTCGATCTATCAAACCTTTGCTCA
TCAATCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTAGAAGACAAACGATTTGGTAAAGGAGCAACAA
GCAGCTATCAAGTGTATGCGACTCGTAAAGAGGTGGTTGATAGCCGAGCTGACGCGCTAACGAAAGCAGGGTTTAAGCCC
ATCGTTGTCGACACTCAGGCCCATGGTTTACTCAACATTTGGCAATTGGCTTCGCATTTGTATCCAGAAAAAAAGAATTG
GCTGTTGGTGGATGTTGGCGTTGATCAAACTTCATTAGGCATTATTCCCCAAGGTTCAGCGCCATTTTATAAAGATATTG
CCTTTGGCATTCAAGATCTTTGCAGTACGGGTAACTCGATGGATATGGAGGGTGGGTTTAGTAACGTTGAGGAGAAGCAT
AAGTTTATTGTCAATTTGATTGAAAAACTCAAGCGTCAGTTACAGCTCTATTCATCGGTCAATGCGCTTCAACCTATCTC
AGGAATTTGGCTAATGGGCGAAGGAGCAAGTATGCCGATGGTCGTTGAAGAGTTAGAGCGACATTTTCAGTTAAGTTGTG
AGTCTTTGAACCCCCTATCTTTGTTTGAGAATAAGGTCGCGAAAAAACGTCGATTACCCATGGATTGGCAACATTTTGGT
ATTGCAGCAGGCATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-220)

• Type IV pilus assembly protein PilM; (PilM_2) (242-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	53.097	99.413	0.528
pilM	Vibrio campbellii strain DS40M4	47.661	100	0.478