Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R9B17_RS03085 Genome accession   NZ_AP028399
Coordinates   602505..603278 (+) Length   257 a.a.
NCBI ID   WP_002859984.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11515     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 597505..608278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9B17_RS03070 (B11515_06130) - 598354..600288 (-) 1935 WP_317739110.1 RNB domain-containing ribonuclease -
  R9B17_RS03075 (B11515_06140) ilvC 600407..601429 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  R9B17_RS03080 (B11515_06150) - 601433..602515 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  R9B17_RS03085 (B11515_06160) dprA 602505..603278 (+) 774 WP_002859984.1 DNA-processing protein DprA Machinery gene
  R9B17_RS03090 (B11515_06170) ruvX 603275..603658 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R9B17_RS03095 (B11515_06180) - 603687..604526 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R9B17_RS03100 (B11515_06190) msrA 604701..605198 (-) 498 WP_032586473.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R9B17_RS03105 (B11515_06200) ppa 605240..605758 (-) 519 WP_002852138.1 inorganic diphosphatase -
  R9B17_RS03110 (B11515_06210) adk 605768..606346 (-) 579 WP_002859580.1 adenylate kinase -
  R9B17_RS03115 (B11515_06220) aspS 606343..608094 (-) 1752 WP_032586472.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.61 Da        Isoelectric Point: 6.4874

>NTDB_id=105436 R9B17_RS03085 WP_002859984.1 602505..603278(+) (dprA) [Campylobacter jejuni strain BCH-11515]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=105436 R9B17_RS03085 WP_002859984.1 602505..603278(+) (dprA) [Campylobacter jejuni strain BCH-11515]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.054

100

0.981
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment