Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8608_RS08035 Genome accession   NZ_AP028398
Coordinates   1549021..1550202 (-) Length   393 a.a.
NCBI ID   WP_317647966.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11511     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1544021..1555202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8608_RS08005 (B11511_16050) - 1544566..1544907 (+) 342 WP_002784057.1 hypothetical protein -
  R8608_RS08010 (B11511_16060) flgM 1544970..1545167 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8608_RS08015 (B11511_16070) - 1545209..1545643 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8608_RS08020 (B11511_16080) flgK 1545653..1547479 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  R8608_RS08025 (B11511_16090) - 1547496..1548260 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8608_RS08030 (B11511_16100) - 1548264..1549034 (+) 771 WP_002873601.1 TSUP family transporter -
  R8608_RS08035 (B11511_16110) ctsF 1549021..1550202 (-) 1182 WP_317647966.1 type II secretion system F family protein Machinery gene
  R8608_RS08040 (B11511_16120) ctsE 1550199..1551758 (-) 1560 WP_043011746.1 GspE/PulE family protein Machinery gene
  R8608_RS08045 (B11511_16130) ctsX 1551748..1552335 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8608_RS08050 (B11511_16140) ctsP 1552339..1552947 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8608_RS08055 (B11511_16150) ctsD 1552940..1554352 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8608_RS08060 (B11511_16160) ctsR 1554330..1554641 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45758.39 Da        Isoelectric Point: 9.2580

>NTDB_id=105423 R8608_RS08035 WP_317647966.1 1549021..1550202(-) (ctsF) [Campylobacter jejuni strain BCH-11511]
MKFYEVEFLKNNQNYTKTIKAENLNTAQARALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCKVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105423 R8608_RS08035 WP_317647966.1 1549021..1550202(-) (ctsF) [Campylobacter jejuni strain BCH-11511]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAGAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTAAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAGAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982

Multiple sequence alignment