Detailed information NTG1054012

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACE4QZ_RS05375
• Genome accession: NZ_CP169881
• Coordinates: 1100082..1100948 (-)
• Length: 288 a.a.
• NCBI ID: WP_410480414.1
• Uniprot ID: -
• Organism: Pseudomonas sp. DCA-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1095082..1105948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE4QZ_RS05340	-	1095471..1096766 (-)	1296	WP_410480413.1	NAD(P)/FAD-dependent oxidoreductase	-
ACE4QZ_RS05345	-	1096851..1097024 (-)	174	WP_008091951.1	DUF3094 domain-containing protein	-
ACE4QZ_RS05350	-	1097157..1097786 (-)	630	WP_003247546.1	DUF1780 domain-containing protein	-
ACE4QZ_RS05355	-	1097842..1098273 (-)	432	WP_103443441.1	hypothetical protein	-
ACE4QZ_RS05360	-	1098361..1099068 (+)	708	WP_021784188.1	energy-coupling factor ABC transporter permease	-
ACE4QZ_RS05365	yacG	1099262..1099462 (-)	201	WP_010951889.1	DNA gyrase inhibitor YacG	-
ACE4QZ_RS05370	coaE	1099459..1100082 (-)	624	WP_004575721.1	dephospho-CoA kinase	-
ACE4QZ_RS05375	pilD	1100082..1100948 (-)	867	WP_410480414.1	prepilin peptidase	Machinery gene
ACE4QZ_RS05380	-	1100951..1102159 (-)	1209	WP_021784186.1	type II secretion system F family protein	-
ACE4QZ_RS05385	-	1102376..1102786 (+)	411	WP_012051131.1	pilin	-
ACE4QZ_RS05395	-	1103100..1104314 (+)	1215	WP_156867335.1	tyrosine-type recombinase/integrase	-
ACE4QZ_RS05400	-	1104311..1105057 (+)	747	WP_280070249.1	hypothetical protein	-
ACE4QZ_RS05405	-	1105164..1105367 (+)	204	WP_128610139.1	helix-turn-helix transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31746.77 Da
• Isoelectric Point: 7.9101

>NTDB_id=1054012 ACE4QZ_RS05375 WP_410480414.1 1100082..1100948(-) (pilD) [Pseudomonas sp. DCA-1]
MTLWALLAEQPAYFLTLATALGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHARFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVALADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRFRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYIQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=1054012 ACE4QZ_RS05375 WP_410480414.1 1100082..1100948(-) (pilD) [Pseudomonas sp. DCA-1]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGCGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACGCGCGTTTCGACCTGTGTCTGCCCGCCTCCCGGTGCCCACACTGCGCACACCGGATTCGTGCG
TGGGAGAACATTCCAGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTTGGCGCTTCGGTAGAGGCGTTGCTGG
CTCTGCCGCTGACCTGGTGCCTGCTGGCACTGAGCCTGATCGATGCGGACCACCAGTTGCTGCCGGATGTGCTGGTGTTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGTATCCATGTGGCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTTGGGGCG
CTTGTTGGCCTGTGCCTGCTGCGTTTTCGCCGGCATGCCATGGGCACGGCAATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATACAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.986	96.181	0.5
pilD	Acinetobacter baumannii D1279779	49.822	97.569	0.486
pilD	Acinetobacter nosocomialis M2	49.11	97.569	0.479
pilD	Vibrio campbellii strain DS40M4	48.727	95.486	0.465
pilD	Neisseria gonorrhoeae MS11	47.584	93.403	0.444