Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACEZ45_RS17165 Genome accession   NZ_CP169877
Coordinates   3444725..3446110 (-) Length   461 a.a.
NCBI ID   WP_069473599.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JF     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3439725..3451110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZ45_RS17130 (ACEZ45_17125) flgL 3439900..3440817 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACEZ45_RS17135 (ACEZ45_17130) flgK 3440829..3442346 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  ACEZ45_RS17140 (ACEZ45_17135) - 3442362..3442844 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACEZ45_RS17145 (ACEZ45_17140) flgM 3442859..3443125 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACEZ45_RS17150 (ACEZ45_17145) - 3443195..3443614 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  ACEZ45_RS17155 (ACEZ45_17150) comFC 3443688..3444377 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ACEZ45_RS17160 (ACEZ45_17155) - 3444383..3444667 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  ACEZ45_RS17165 (ACEZ45_17160) comFA 3444725..3446110 (-) 1386 WP_069473599.1 DEAD/DEAH box helicase Machinery gene
  ACEZ45_RS17170 (ACEZ45_17165) - 3446218..3447066 (-) 849 WP_043867471.1 DegV family protein -
  ACEZ45_RS17175 (ACEZ45_17170) degU 3447164..3447853 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACEZ45_RS17180 (ACEZ45_17175) degS 3447930..3449093 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  ACEZ45_RS17185 (ACEZ45_17180) - 3449316..3449963 (+) 648 WP_043867472.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52573.06 Da        Isoelectric Point: 10.0979

>NTDB_id=1054000 ACEZ45_RS17165 WP_069473599.1 3444725..3446110(-) (comFA) [Bacillus amyloliquefaciens strain JF]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQELQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1054000 ACEZ45_RS17165 WP_069473599.1 3444725..3446110(-) (comFA) [Bacillus amyloliquefaciens strain JF]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAGAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment