Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8952_RS07630 Genome accession   NZ_AP028396
Coordinates   1497562..1498740 (-) Length   392 a.a.
NCBI ID   WP_100647898.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11505     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1492562..1503740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8952_RS07600 (B11505_15030) - 1493104..1493445 (+) 342 WP_002869194.1 hypothetical protein -
  R8952_RS07605 (B11505_15040) flgM 1493508..1493705 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8952_RS07610 (B11505_15050) - 1493748..1494182 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8952_RS07615 (B11505_15060) flgK 1494192..1496018 (+) 1827 WP_002858862.1 flagellar hook-associated protein FlgK -
  R8952_RS07620 (B11505_15070) - 1496035..1496797 (+) 763 Protein_1486 TIGR02757 family protein -
  R8952_RS07625 (B11505_15080) - 1496801..1497565 (+) 765 WP_002855301.1 TSUP family transporter -
  R8952_RS07630 (B11505_15090) ctsF 1497562..1498740 (-) 1179 WP_100647898.1 type II secretion system F family protein Machinery gene
  R8952_RS07635 (B11505_15100) ctsE 1498737..1500296 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8952_RS07640 (B11505_15110) ctsX 1500286..1500873 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8952_RS07645 (B11505_15120) ctsP 1500877..1501485 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8952_RS07650 (B11505_15130) ctsD 1501478..1502890 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8952_RS07655 (B11505_15140) ctsR 1502868..1503179 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45664.28 Da        Isoelectric Point: 9.0938

>NTDB_id=105396 R8952_RS07630 WP_100647898.1 1497562..1498740(-) (ctsF) [Campylobacter jejuni strain BCH-11505]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=105396 R8952_RS07630 WP_100647898.1 1497562..1498740(-) (ctsF) [Campylobacter jejuni strain BCH-11505]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGTGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCGGGGGTCAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.745

100

0.997

Multiple sequence alignment