Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS19_RS01720 Genome accession   NZ_CP169872
Coordinates   354646..355506 (-) Length   286 a.a.
NCBI ID   WP_001152283.1    Uniprot ID   A0A009QK25
Organism   Acinetobacter baumannii strain Up377     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349646..360506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS19_RS01695 - 350537..351847 (+) 1311 WP_000753283.1 tetratricopeptide repeat protein -
  ABUS19_RS01700 - 351924..352250 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS19_RS01705 rlmB 352352..353101 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS19_RS01710 - 353137..354051 (+) 915 WP_000075020.1 DMT family transporter -
  ABUS19_RS01715 coaE 354048..354644 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS19_RS01720 pilD 354646..355506 (-) 861 WP_001152283.1 A24 family peptidase Machinery gene
  ABUS19_RS01725 pilC 355506..356732 (-) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  ABUS19_RS01730 pilB 356761..358473 (-) 1713 WP_001274992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS19_RS01735 tpiA 358764..359558 (+) 795 WP_000016932.1 triose-phosphate isomerase -
  ABUS19_RS01740 secG 359571..359900 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32144.59 Da        Isoelectric Point: 7.1041

>NTDB_id=1053896 ABUS19_RS01720 WP_001152283.1 354646..355506(-) (pilD) [Acinetobacter baumannii strain Up377]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053896 ABUS19_RS01720 WP_001152283.1 354646..355506(-) (pilD) [Acinetobacter baumannii strain Up377]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009QK25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Acinetobacter baumannii D1279779

98.252

100

0.983
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment