Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS10_RS16425 Genome accession   NZ_CP169869
Coordinates   3518903..3519763 (+) Length   286 a.a.
NCBI ID   WP_199947870.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Up280     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3513903..3524763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS16405 secG 3514508..3514837 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS10_RS16410 tpiA 3514850..3515644 (-) 795 WP_000016932.1 triose-phosphate isomerase -
  ABUS10_RS16415 pilB 3515935..3517647 (+) 1713 WP_001274985.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS10_RS16420 pilC 3517677..3518903 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABUS10_RS16425 pilD 3518903..3519763 (+) 861 WP_199947870.1 A24 family peptidase Machinery gene
  ABUS10_RS16430 coaE 3519765..3520361 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS10_RS16435 - 3520358..3521272 (-) 915 WP_000075015.1 DMT family transporter -
  ABUS10_RS16440 rlmB 3521308..3522057 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS10_RS16445 - 3522159..3522485 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS10_RS16450 - 3522562..3523872 (-) 1311 WP_199947871.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32150.56 Da        Isoelectric Point: 7.1041

>NTDB_id=1053877 ABUS10_RS16425 WP_199947870.1 3518903..3519763(+) (pilD) [Acinetobacter baumannii strain Up280]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPFIDHERLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053877 ABUS10_RS16425 WP_199947870.1 3518903..3519763(+) (pilD) [Acinetobacter baumannii strain Up280]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGTTTATTGATCATGAGAGGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAGGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

97.902

100

0.979
  pilD Vibrio campbellii strain DS40M4

52.92

95.804

0.507
  pilD Vibrio cholerae strain A1552

53.309

95.105

0.507
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment