Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS10_RS10090 | Genome accession | NZ_CP169869 |
| Coordinates | 2153891..2154271 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Up280 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2148891..2159271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS10_RS10060 | tadA | 2149010..2149513 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| ABUS10_RS10065 | - | 2149520..2150644 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS10_RS10070 | ung | 2150641..2151354 (-) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| ABUS10_RS10075 | - | 2151405..2152001 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS10_RS10080 | gspK | 2152231..2153190 (-) | 960 | WP_000301460.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS10_RS10085 | xcpW | 2153190..2153891 (-) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS10_RS10090 | xcpV | 2153891..2154271 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS10_RS10095 | - | 2154261..2154815 (-) | 555 | WP_000841372.1 | type II secretion system protein | - |
| ABUS10_RS10100 | - | 2154825..2155433 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS10_RS10105 | - | 2155471..2156244 (-) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| ABUS10_RS10110 | - | 2156262..2156603 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABUS10_RS10115 | - | 2156615..2157595 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| ABUS10_RS10120 | kdsB | 2157607..2158368 (-) | 762 | WP_000680696.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1053862 ABUS10_RS10090 WP_000836911.1 2153891..2154271(-) (xcpV) [Acinetobacter baumannii strain Up280]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1053862 ABUS10_RS10090 WP_000836911.1 2153891..2154271(-) (xcpV) [Acinetobacter baumannii strain Up280]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |