Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS10_RS10085 Genome accession   NZ_CP169869
Coordinates   2153190..2153891 (-) Length   233 a.a.
NCBI ID   WP_000594572.1    Uniprot ID   A0A009IN88
Organism   Acinetobacter baumannii strain Up280     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2148190..2158891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS10055 - 2148497..2148940 (-) 444 WP_002068274.1 SRPBCC family protein -
  ABUS10_RS10060 tadA 2149010..2149513 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  ABUS10_RS10065 - 2149520..2150644 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS10_RS10070 ung 2150641..2151354 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  ABUS10_RS10075 - 2151405..2152001 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABUS10_RS10080 gspK 2152231..2153190 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  ABUS10_RS10085 xcpW 2153190..2153891 (-) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS10_RS10090 xcpV 2153891..2154271 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS10_RS10095 - 2154261..2154815 (-) 555 WP_000841372.1 type II secretion system protein -
  ABUS10_RS10100 - 2154825..2155433 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS10_RS10105 - 2155471..2156244 (-) 774 WP_000497301.1 TatD family hydrolase -
  ABUS10_RS10110 - 2156262..2156603 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  ABUS10_RS10115 - 2156615..2157595 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  ABUS10_RS10120 kdsB 2157607..2158368 (-) 762 WP_000680696.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26613.59 Da        Isoelectric Point: 9.5501

>NTDB_id=1053861 ABUS10_RS10085 WP_000594572.1 2153190..2153891(-) (xcpW) [Acinetobacter baumannii strain Up280]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053861 ABUS10_RS10085 WP_000594572.1 2153190..2153891(-) (xcpW) [Acinetobacter baumannii strain Up280]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IN88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment