Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS28_RS16095 Genome accession   NZ_CP169866
Coordinates   3348997..3349857 (+) Length   286 a.a.
NCBI ID   WP_002126490.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp779     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3343997..3354857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS28_RS16075 secG 3344602..3344931 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS28_RS16080 tpiA 3344944..3345738 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  ABUS28_RS16085 pilB 3346029..3347741 (+) 1713 WP_001274979.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS28_RS16090 pilC 3347771..3348997 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABUS28_RS16095 pilD 3348997..3349857 (+) 861 WP_002126490.1 A24 family peptidase Machinery gene
  ABUS28_RS16100 coaE 3349859..3350455 (+) 597 WP_002126478.1 dephospho-CoA kinase -
  ABUS28_RS16105 - 3350452..3351366 (-) 915 WP_002126491.1 DMT family transporter -
  ABUS28_RS16110 rlmB 3351402..3352151 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS28_RS16115 - 3352253..3352579 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS28_RS16120 - 3352656..3353966 (-) 1311 Protein_3145 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32086.49 Da        Isoelectric Point: 7.1041

>NTDB_id=1053829 ABUS28_RS16095 WP_002126490.1 3348997..3349857(+) (pilD) [Acinetobacter baumannii strain Rp779]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLATLGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053829 ABUS28_RS16095 WP_002126490.1 3348997..3349857(+) (pilD) [Acinetobacter baumannii strain Rp779]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCCGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAACATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

98.601

100

0.986
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437

Multiple sequence alignment