Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABUS28_RS10145 | Genome accession | NZ_CP169866 |
| Coordinates | 2108206..2108586 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836906.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Rp779 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2103206..2113586
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS28_RS10115 | tadA | 2103325..2103828 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| ABUS28_RS10120 | - | 2103835..2104959 (-) | 1125 | WP_086384405.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABUS28_RS10125 | ung | 2104956..2105669 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| ABUS28_RS10130 | - | 2105720..2106316 (-) | 597 | WP_000908453.1 | 6-carboxytetrahydropterin synthase | - |
| ABUS28_RS10135 | gspK | 2106546..2107505 (-) | 960 | WP_000301463.1 | type II secretion system minor pseudopilin GspK | - |
| ABUS28_RS10140 | xcpW | 2107505..2108206 (-) | 702 | WP_000594587.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABUS28_RS10145 | xcpV | 2108206..2108586 (-) | 381 | WP_000836906.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABUS28_RS10150 | - | 2108576..2109130 (-) | 555 | WP_000841378.1 | type II secretion system protein | - |
| ABUS28_RS10155 | - | 2109140..2109748 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABUS28_RS10160 | - | 2109786..2110559 (-) | 774 | WP_000497295.1 | TatD family hydrolase | - |
| ABUS28_RS10165 | - | 2110577..2110918 (-) | 342 | WP_001183025.1 | PilZ domain-containing protein | - |
| ABUS28_RS10170 | - | 2110930..2111910 (-) | 981 | WP_261480820.1 | DNA polymerase III subunit delta' | - |
| ABUS28_RS10175 | kdsB | 2111922..2112683 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13984.21 Da Isoelectric Point: 9.8006
>NTDB_id=1053814 ABUS28_RS10145 WP_000836906.1 2108206..2108586(-) (xcpV) [Acinetobacter baumannii strain Rp779]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTHSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTHSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1053814 ABUS28_RS10145 WP_000836906.1 2108206..2108586(-) (xcpV) [Acinetobacter baumannii strain Rp779]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCACTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCGGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCACTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCGGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |