Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   ABUS28_RS10140 Genome accession   NZ_CP169866
Coordinates   2107505..2108206 (-) Length   233 a.a.
NCBI ID   WP_000594587.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp779     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102505..2113206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS28_RS10110 - 2102812..2103255 (-) 444 WP_001246675.1 SRPBCC family protein -
  ABUS28_RS10115 tadA 2103325..2103828 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  ABUS28_RS10120 - 2103835..2104959 (-) 1125 WP_086384405.1 enoyl-CoA hydratase/isomerase family protein -
  ABUS28_RS10125 ung 2104956..2105669 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  ABUS28_RS10130 - 2105720..2106316 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  ABUS28_RS10135 gspK 2106546..2107505 (-) 960 WP_000301463.1 type II secretion system minor pseudopilin GspK -
  ABUS28_RS10140 xcpW 2107505..2108206 (-) 702 WP_000594587.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABUS28_RS10145 xcpV 2108206..2108586 (-) 381 WP_000836906.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABUS28_RS10150 - 2108576..2109130 (-) 555 WP_000841378.1 type II secretion system protein -
  ABUS28_RS10155 - 2109140..2109748 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  ABUS28_RS10160 - 2109786..2110559 (-) 774 WP_000497295.1 TatD family hydrolase -
  ABUS28_RS10165 - 2110577..2110918 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  ABUS28_RS10170 - 2110930..2111910 (-) 981 WP_261480820.1 DNA polymerase III subunit delta' -
  ABUS28_RS10175 kdsB 2111922..2112683 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26681.66 Da        Isoelectric Point: 9.3468

>NTDB_id=1053813 ABUS28_RS10140 WP_000594587.1 2107505..2108206(-) (xcpW) [Acinetobacter baumannii strain Rp779]
MIKNKYIHIRSIASRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQDDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1053813 ABUS28_RS10140 WP_000594587.1 2107505..2108206(-) (xcpW) [Acinetobacter baumannii strain Rp779]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGATGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.142

100

0.991

Multiple sequence alignment