Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8952_RS02910 Genome accession   NZ_AP028396
Coordinates   558483..559133 (-) Length   216 a.a.
NCBI ID   WP_317654247.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11505     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 553483..564133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8952_RS02875 (B11505_05660) - 553861..554865 (+) 1005 WP_079344011.1 hypothetical protein -
  R8952_RS02880 (B11505_05670) tlyA 554862..555623 (+) 762 WP_032590817.1 TlyA family RNA methyltransferase -
  R8952_RS02885 (B11505_05680) ribF 555589..556443 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  R8952_RS02890 (B11505_05690) cmoA 556430..557140 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8952_RS02895 (B11505_05700) - 557130..557351 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8952_RS02900 (B11505_05710) - 557348..557782 (-) 435 WP_032590819.1 EexN family lipoprotein -
  R8952_RS02905 (B11505_05720) - 557840..558472 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R8952_RS02910 (B11505_05730) CJE0566 558483..559133 (-) 651 WP_317654247.1 DNA/RNA non-specific endonuclease Regulator
  R8952_RS02915 (B11505_05740) nth 559130..559756 (-) 627 WP_002852225.1 endonuclease III -
  R8952_RS02920 (B11505_05750) peb4 559837..560658 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  R8952_RS02925 (B11505_05760) fbaA 560658..561722 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  R8952_RS02930 (B11505_05770) - 561817..563259 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25500.16 Da        Isoelectric Point: 9.6573

>NTDB_id=105381 R8952_RS02910 WP_317654247.1 558483..559133(-) (CJE0566) [Campylobacter jejuni strain BCH-11505]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=105381 R8952_RS02910 WP_317654247.1 558483..559133(-) (CJE0566) [Campylobacter jejuni strain BCH-11505]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment