Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | ABUS28_RS02065 | Genome accession | NZ_CP169866 |
| Coordinates | 433743..434378 (-) | Length | 211 a.a. |
| NCBI ID | WP_000472267.1 | Uniprot ID | N9K0C6 |
| Organism | Acinetobacter baumannii strain Rp779 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 401416..442624 | 433743..434378 | within | 0 |
Gene organization within MGE regions
Location: 401416..442624
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS28_RS01910 | - | 401795..402661 (-) | 867 | WP_261481064.1 | LysR family transcriptional regulator | - |
| ABUS28_RS01915 | - | 402770..403672 (+) | 903 | WP_002058233.1 | DMT family transporter | - |
| ABUS28_RS01920 | - | 403708..403992 (+) | 285 | WP_002058238.1 | YciI family protein | - |
| ABUS28_RS01925 | - | 404064..404894 (-) | 831 | WP_002058229.1 | hypothetical protein | - |
| ABUS28_RS01930 | - | 404989..405294 (+) | 306 | WP_000122230.1 | IS630 transposase-related protein | - |
| ABUS28_RS01935 | - | 405342..405836 (+) | 495 | WP_001003818.1 | IS630 family transposase | - |
| ABUS28_RS01940 | glyS | 406006..408075 (-) | 2070 | WP_002058245.1 | glycine--tRNA ligase subunit beta | - |
| ABUS28_RS01945 | glyQ | 408075..409052 (-) | 978 | WP_000085212.1 | glycine--tRNA ligase subunit alpha | - |
| ABUS28_RS01950 | - | 409422..410606 (+) | 1185 | WP_002058223.1 | TCR/Tet family MFS transporter | - |
| ABUS28_RS01955 | - | 410778..412040 (+) | 1263 | WP_002058248.1 | putative DNA modification/repair radical SAM protein | - |
| ABUS28_RS01960 | - | 412043..412840 (+) | 798 | WP_000481308.1 | TIGR03915 family putative DNA repair protein | - |
| ABUS28_RS01965 | - | 412973..414073 (+) | 1101 | WP_000111467.1 | HPP family protein | - |
| ABUS28_RS01970 | - | 414143..414397 (-) | 255 | WP_000013717.1 | PspC domain-containing protein | - |
| ABUS28_RS01975 | - | 414650..415297 (+) | 648 | WP_000054181.1 | hypothetical protein | - |
| ABUS28_RS01980 | - | 415369..417192 (-) | 1824 | WP_001112080.1 | acyl-CoA dehydrogenase C-terminal domain-containing protein | - |
| ABUS28_RS01985 | - | 417450..419753 (+) | 2304 | WP_002058261.1 | hypothetical protein | - |
| ABUS28_RS01990 | aroE | 419800..420588 (-) | 789 | WP_002058250.1 | shikimate dehydrogenase | - |
| ABUS28_RS01995 | hemF | 420762..421712 (-) | 951 | WP_002058243.1 | oxygen-dependent coproporphyrinogen oxidase | - |
| ABUS28_RS02000 | ribA | 421840..422442 (-) | 603 | WP_001121174.1 | GTP cyclohydrolase II | - |
| ABUS28_RS02005 | dxs | 422746..424650 (+) | 1905 | WP_002058253.1 | 1-deoxy-D-xylulose-5-phosphate synthase | - |
| ABUS28_RS02010 | - | 424773..425603 (+) | 831 | WP_000433617.1 | inositol monophosphatase family protein | - |
| ABUS28_RS02015 | - | 426013..427860 (+) | 1848 | WP_000047395.1 | DEAD/DEAH box helicase | - |
| ABUS28_RS02020 | - | 427952..428137 (+) | 186 | WP_000471151.1 | hypothetical protein | - |
| ABUS28_RS02025 | - | 428264..429082 (+) | 819 | WP_004712625.1 | ABC transporter ATP-binding protein | - |
| ABUS28_RS02030 | mlaE | 429079..429855 (+) | 777 | WP_001091949.1 | lipid asymmetry maintenance ABC transporter permease subunit MlaE | - |
| ABUS28_RS02035 | - | 429855..430535 (+) | 681 | WP_000842362.1 | outer membrane lipid asymmetry maintenance protein MlaD | - |
| ABUS28_RS02040 | - | 430562..431203 (+) | 642 | WP_002058237.1 | phospholipid-binding protein MlaC | - |
| ABUS28_RS02045 | - | 431215..431502 (+) | 288 | WP_000250997.1 | lipid asymmetry maintenance protein MlaB | - |
| ABUS28_RS02050 | - | 431572..432585 (-) | 1014 | WP_000888321.1 | CorA family divalent cation transporter | - |
| ABUS28_RS02055 | - | 432743..433324 (+) | 582 | WP_002058225.1 | TIGR00730 family Rossman fold protein | - |
| ABUS28_RS02060 | - | 433339..433740 (+) | 402 | WP_032022877.1 | NUDIX domain-containing protein | - |
| ABUS28_RS02065 | comF | 433743..434378 (-) | 636 | WP_000472267.1 | ComF family protein | Machinery gene |
| ABUS28_RS02070 | recG | 434371..436416 (-) | 2046 | WP_000204955.1 | ATP-dependent DNA helicase RecG | - |
| ABUS28_RS02075 | - | 436437..437252 (+) | 816 | WP_000547774.1 | NAD-dependent epimerase/dehydratase family protein | - |
| ABUS28_RS02080 | adeT2 | 437332..438318 (+) | 987 | WP_002058258.1 | putative multidrug efflux protein AdeT2 | - |
| ABUS28_RS02085 | plsB | 438362..440935 (-) | 2574 | WP_000045408.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| ABUS28_RS02090 | - | 441211..442083 (+) | 873 | WP_000993136.1 | acyl-CoA thioesterase II | - |
Sequence
Protein
Download Length: 211 a.a. Molecular weight: 24572.77 Da Isoelectric Point: 9.8358
>NTDB_id=1053806 ABUS28_RS02065 WP_000472267.1 433743..434378(-) (comF) [Acinetobacter baumannii strain Rp779]
MFKFLNPQYLFQLLSPCLLCEIGKREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY
MFKFLNPQYLFQLLSPCLLCEIGKREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY
Nucleotide
Download Length: 636 bp
>NTDB_id=1053806 ABUS28_RS02065 WP_000472267.1 433743..434378(-) (comF) [Acinetobacter baumannii strain Rp779]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAAAACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAACAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAAAACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAACAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baumannii D1279779 |
98.578 |
100 |
0.986 |
| comF | Acinetobacter baumannii strain A118 |
98.578 |
100 |
0.986 |