Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS39_RS17020 Genome accession   NZ_CP169859
Coordinates   3533921..3534781 (+) Length   286 a.a.
NCBI ID   WP_001152278.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3528921..3539781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS39_RS17000 secG 3529526..3529855 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS39_RS17005 tpiA 3529868..3530662 (-) 795 WP_000016940.1 triose-phosphate isomerase -
  ABUS39_RS17010 pilB 3530953..3532665 (+) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS39_RS17015 pilC 3532695..3533921 (+) 1227 WP_000279218.1 type II secretion system F family protein Machinery gene
  ABUS39_RS17020 pilD 3533921..3534781 (+) 861 WP_001152278.1 A24 family peptidase Machinery gene
  ABUS39_RS17025 coaE 3534783..3535379 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  ABUS39_RS17030 - 3535376..3536290 (-) 915 WP_000075015.1 DMT family transporter -
  ABUS39_RS17035 rlmB 3536326..3537075 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS39_RS17040 - 3537177..3537503 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS39_RS17045 - 3537580..3538890 (-) 1311 WP_002055139.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32056.47 Da        Isoelectric Point: 7.1041

>NTDB_id=1053784 ABUS39_RS17020 WP_001152278.1 3533921..3534781(+) (pilD) [Acinetobacter baumannii strain Rp772]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053784 ABUS39_RS17020 WP_001152278.1 3533921..3534781(+) (pilD) [Acinetobacter baumannii strain Rp772]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

99.301

100

0.993
  pilD Acinetobacter nosocomialis M2

98.951

100

0.99
  pilD Vibrio cholerae strain A1552

54.044

95.105

0.514
  pilD Vibrio campbellii strain DS40M4

52.768

94.755

0.5
  pilD Neisseria gonorrhoeae MS11

47.727

92.308

0.441

Multiple sequence alignment